tatdn2


Basic Information

Item Value
gene id tatdn2
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15948449 ~ 15960280 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798754.1
AAGGCACCCCATCTTTTTTTCGCAATTGACTTTTTCATTGAGTTATTTTTTTCTATGGTTGTCGTTCATTAGTCACATCTCGTTGGTTGATCTCGCGAGACGTAGACCATGGGTTCAAACGGTCCAAACCAAACCCGAACTTTAACACCATCTAGTGGTTAATTAAACTCAAACTTGTAATTCAATCCAATATTGAACATGTCAGTCTAAATCGTcatattttgattttgttttgaaacGTTGTTAGCAAGAAATTGTGTAAGCTCAGTTACCGAGTGGCTGACTGAACCAACGCTGATAAAGTGACATCTTCCCACCCTGCCATTTTTACTGCGCCAAGCCTGAGAAGAACTCTCAGACATGGACAGCAGCAGAAAGAAGTTGACATTTAAGTGGCGACGAACTACAATCACCTCACCCACACATCCTCAGCAGAGAGATGCTGGCTTAGGCACGCCCTCTCGCTGGAATATGTCGCCGAATGAAGAGTCAAATACTTTGCCCCTCAGAGACTCTCCAGGACCTGATGGCCTTGGAGCACTGAGTCTGGACACTCCCAAGAGAAAAGCAGGGGTGCTCGGTGAAAGCACACCCTCTTTTGGCAAGCTTAAGCTGAGGAAGCTTTCCAGGATAAATTTGGAAAAATTCACCACTTCAGAGGAGAAACCTATGGACAACTTATCCTGGCAGCTGGAATCCACAGAGAGCCAGCAAGTATCACCTCCACCTCACTCTTTCGTcttgaaaaagaaagagaggacacCCGAAGAGGGATCGAAGGCTATCTACAGGAGGGCATTGATCGCAGCCATTGGCAACCCAAGCACCGGAGGCAGCTCTACAAAGATCCCCAGGACTTGCACTAACAGCCTGTCTTTGCCGTTTGTGTCTTCACCAGTGAAGACTGAAGCGGCCAGTCCAGCATCACTTGATGGAACGGTCATAGATATAAAGTGTTCCTCAATCAAACCTGAAAATGAATTTGAAGACAACGGCACTGTCCAGGAAGAACAGTGGTCCCCTCTTCAGGTGTTTGAGGACATTGGAGCCCAAGGTGACAGCTCAGAGCTAAAAACAGACGGAAGAagtGTTGTGCTAAAAGGAGAAGATTCACCCGAGATATTAGTTGCTCAGGACTCTGTGCTTGTAGAAACAACCTCTCAAGACaagttatttgctacagaaacTGGACCAGAAGCCGAGGAATGTGACTCGTCCCTCCCTGCCCTGGAGTATATCCCAGATTCTTTGACTTGTTGCTCTTTTGACAGCCAACAGTGGGAAAGTCCTTCTGTGACAACCCAGGGAGATGCTACTTCCTCTCTAACTTTTTCATCCACTAATGAAACCACTGAGGCTGTCCAGGCAGCTGATGAGGACATTGAGATGCCTTTCTCACTGTCACACAGGAAAGTTTTTGTCTCCGTCAAGCAGCCCCACCCAACAAACATGGCCCCTCCAAAGACATTCAGAGTTGAGACAGAGAGTTTCCGCTCCTCCAGCATTATGGCCTATTTATCGGATCCCTTTGCTCTGCCACTACACTCAAATAGAGGAGCATTGAACCCTCACTTGAAGTCTACAACAACACGCAGGCAGTCCGATGCTGGCTCTTCCATGCTTCACCCTCCCTACTCCTTTACACATGGTGGCACCCCTAAAAGAAGATTTTCCTTGGGGGCAGAACCTATGCGGAACAGTTACCCCAACCTGAACAATCAGGTTGGTTTCATAGACACACACTGTCATATAGACATGCTCTATGGGAAGCTTGGCTTCTGCGGGACATTCAACAGCTTTCAAAGGCAGTACCAAAGCAGCTTTCCTCCACAGTTCAGAGGCTGTATTGCCAACTTCTGCAACCCAAGGCTCATGGTGAAGGAGGCCCTGTGGGAAGGTTTGCTGGCTGAAGACATGGTATGGGGGGCGTTTGGGTGCCACCCCCACTTTGCCAAAGACTACTCAAGTGTCCAGGAACGCAACATACTGATGGCCATGCGGCATCCAAAAGCTGTGGCATTTGGTGAGATAGGCCTGGACTACTCCCATAAAAACTCCACTGACTCCACCAGGCAAAAAGAGGTGTTTGCGCGTCAGCTGCGTTTGGCTGTGGCCATGCAGAAGCCTCTGGTGATCCACTGTCGGGACGCAGATGATGACCTGCTGGCAATCATGAAGAAATGGGTCCCGAGGGAATACAGAATTCACAGGCACTGTTTCACAAACAGTTATCCAGTGATTGAGCCCTTCCTGACAGAGTTCCCCAATCTCTATGTGGGTTTCACAGCCCTGATTACCTACTACAAGGCCACCGAGGCCCGAGATGCTGTCCGCCAGATCCCTCTGAACCGCATTGTGTTGGAGACAGATGCACCATATTTCCTGCCAAGACAGGTGAGGAAAGATGTCTGCAAGTTTTCACATCCTGGAATGGGCATCCATACGCTGCAGGAGCTGAGCCTGCTGAAGGGGGAAGACATGGCTACGGTCCTCGCCACCATCCGAAACAACACCGTTCAACTTTATGGCGTATGA
>XM_039798755.1
ATGGACAGCAGCAGAAAGAAGTTGACATTTAAGTGGCGACGAACTACAATCACCTCACCCACACATCCTCAGCAGAGAGATGCTGGCTTAGGCACGCCCTCTCGCTGGAATATGTCGCCGAATGAAGAGTCAAATACTTTGCCCCTCAGAGACTCTCCAGGACCTGATGGCCTTGGAGCACTGAGTCTGGACACTCCCAAGAGAAAAGCAGGGGTGCTCGGTGAAAGCACACCCTCTTTTGGCAAGCTTAAGCTGAGGAAGCTTTCCAGGATAAATTTGGAAAAATTCACCACTTCAGAGGAGAAACCTATGGACAACTTATCCTGGCAGCTGGAATCCACAGAGAGCCAGCAAGTATCACCTCCACCTCACTCTTTCGTcttgaaaaagaaagagaggacacCCGAAGAGGGATCGAAGGCTATCTACAGGAGGGCATTGATCGCAGCCATTGGCAACCCAAGCACCGGAGGCAGCTCTACAAAGATCCCCAGGACTTGCACTAACAGCCTGTCTTTGCCGTTTGTGTCTTCACCAGTGAAGACTGAAGCGGCCAGTCCAGCATCACTTGATGGAACGGTCATAGATATAAAGTGTTCCTCAATCAAACCTGAAAATGAATTTGAAGACAACGGCACTGTCCAGGAAGAACAGTGGTCCCCTCTTCAGGTGTTTGAGGACATTGGAGCCCAAGGTGACAGCTCAGAGCTAAAAACAGACGGAAGAagtGTTGTGCTAAAAGGAGAAGATTCACCCGAGATATTAGTTGCTCAGGACTCTGTGCTTGTAGAAACAACCTCTCAAGACaagttatttgctacagaaacTGGACCAGAAGCCGAGGAATGTGACTCGTCCCTCCCTGCCCTGGAGTATATCCCAGATTCTTTGACTTGTTGCTCTTTTGACAGCCAACAGTGGGAAAGTCCTTCTGTGACAACCCAGGGAGATGCTACTTCCTCTCTAACTTTTTCATCCACTAATGAAACCACTGAGGCTGTCCAGGCAGCTGATGAGGACATTGAGATGCCTTTCTCACTGTCACACAGGAAAGTTTTTGTCTCCGTCAAGCAGCCCCACCCAACAAACATGGCCCCTCCAAAGACATTCAGAGTTGAGACAGAGAGTTTCCGCTCCTCCAGCATTATGGCCTATTTATCGGATCCCTTTGCTCTGCCACTACACTCAAATAGAGGAGCATTGAACCCTCACTTGAAGTCTACAACAACACGCAGGCAGTCCGATGCTGGCTCTTCCATGCTTCACCCTCCCTACTCCTTTACACATGGTGGCACCCCTAAAAGAAGATTTTCCTTGGGGGCAGAACCTATGCGGAACAGTTACCCCAACCTGAACAATCAGGTTGGTTTCATAGACACACACTGTCATATAGACATGCTCTATGGGAAGCTTGGCTTCTGCGGGACATTCAACAGCTTTCAAAGGCAGTACCAAAGCAGCTTTCCTCCACAGTTCAGAGGCTGTATTGCCAACTTCTGCAACCCAAGGCTCATGGTGAAGGAGGCCCTGTGGGAAGGTTTGCTGGCTGAAGACATGGTATGGGGGGCGTTTGGGTGCCACCCCCACTTTGCCAAAGACTACTCAAGTGTCCAGGAACGCAACATACTGATGGCCATGCGGCATCCAAAAGCTGTGGCATTTGGTGAGATAGGCCTGGACTACTCCCATAAAAACTCCACTGACTCCACCAGGCAAAAAGAGGTGTTTGCGCGTCAGCTGCGTTTGGCTGTGGCCATGCAGAAGCCTCTGGTGATCCACTGTCGGGACGCAGATGATGACCTGCTGGCAATCATGAAGAAATGGGTCCCGAGGGAATACAGAATTCACAGGCACTGTTTCACAAACAGTTATCCAGTGATTGAGCCCTTCCTGACAGAGTTCCCCAATCTCTATGTGGGTTTCACAGCCCTGATTACCTACTACAAGGCCACCGAGGCCCGAGATGCTGTCCGCCAGATCCCTCTGAACCGCATTGTGTTGGAGACAGATGCACCATATTTCCTGCCAAGACAGGTGAGGAAAGATGTCTGCAAGTTTTCACATCCTGGAATGGGCATCCATACGCTGCAGGAGCTGAGCCTGCTGAAGGGGGAAGACATGGCTACGGTCCTCGCCACCATCCGAAACAACACCGTTCAACTTTATGGCGTATGATCTTCAGAGATGGTGGATAAAAAATCCAAGCAAGAAGGAGAAGTCAGAATCAACGTTTTTGGATATGGTTTGTGACACAAACATTTTATGTGgctttttgttttagatttatCAAGCCTTCATGTAGAGATGGAGGAATATGGAGGAGCAGTCTCATTTGAAACTAAGTCTTGAAACGagtaaaaagcaaaacaataacaatgactggaaggatactgtatattattgtttatattagATTATATTTTATTCCATTGTTCAACACAGAAATTAATTCCTAAGCTTTTTGGTGTCTAGTTTTTGCTGTGTTTACATAATGTGACATCCCTTGTTTGTTCTAATTAATTTGGATGTTTGTCTTGTCTGGCCGCTGTGTAGTTCAGTTTGAAGCAATGGACACATATTAAAAGCCTTTGATCCTGCTTTTTCAA

Function

NR:

description
putative deoxyribonuclease TATDN2 isoform X1

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process

KEGG:

id description
K03424 tatD; TatD DNase family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798754.1 False 2535 mRNA 0.49 7 15948449 15959849
XM_039798755.1 True 2606 mRNA 0.47 6 15952560 15960280

Neighbor

gene id symbol gene type direction distance location
vhl vhl,LOC104941408 coding upstream 2897 15942764 ~ 15945552 (+)
pa2g4a pa2g4,LOC104933448,LOC102793326 coding upstream 34830 15903500 ~ 15913619 (+)
erbb3a erbb3 coding upstream 48548 15879790 ~ 15899901 (+)
arf3b arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding upstream 71589 15871718 ~ 15876860 (+)
LOC120557571 ikzf4 coding upstream 88678 15851997 ~ 15859771 (+)
LOC120558102 LOC104943766 coding downstream 31454 15991734 ~ 16011506 (+)
prkcda prkcd,LOC104933455 coding downstream 56699 16016979 ~ 16034962 (+)
rft1 rft1 coding downstream 75694 16035974 ~ 16039274 (+)
mustn1a mustn1 coding downstream 79533 16039813 ~ 16041213 (+)
arpc4 arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188 coding downstream 201680 16161960 ~ 16167138 (+)
LOC120557201 NA non-coding upstream 26827 15919385 ~ 15921622 (+)
G38948 NA non-coding upstream 33548 15914539 ~ 15914901 (+)
G38885 LOC104942130 non-coding upstream 186134 15760792 ~ 15762315 (+)
G38860 NA non-coding upstream 219049 15727979 ~ 15729400 (+)
G38858 NA non-coding upstream 226265 15718996 ~ 15722184 (+)
G38966 NA non-coding downstream 24344 15984624 ~ 15985096 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding downstream 235099 16195379 ~ 16195784 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding downstream 274734 16235014 ~ 16251725 (+)
G39113 NA non-coding downstream 543158 16503438 ~ 16510185 (+)
G39134 NA non-coding downstream 592404 16552684 ~ 16556205 (+)
crbn crbn,LOC102793823 other upstream 11352 15923321 ~ 15937097 (+)
G38834 NA other upstream 300598 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 1073990 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 1091380 14765297 ~ 14857069 (+)
ccdc174 ccdc174 other downstream 5122 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 89398 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 188845 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 472958 16433238 ~ 16435229 (+)
G39116 NA other downstream 557256 16517536 ~ 16543580 (+)

Expression


Co-expression Network