smpd2b (smpd2,LOC102787414)


Basic Information

Item Value
gene id smpd2b
gene name smpd2,LOC102787414
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 25974025 ~ 25984043 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798774.1
AACACAAATATTTGTATCCGTCGCTTGCGGTCGCTTGTAGGAAAAGGACGTAGCAATGGAAGTGGTCCAACACCGCTAAGTTACCGTTAGTGTTCGTTATTTGAGATGCTGCTCAACCGATTTTGATATTAATTAACTGGGAATAGTTAGCTAGCACGCTTACAAAGCCAAAACTAACATTACAGCATAATAACGGTTAGACGGTCCAGTTAACTTCAGCTGACGTCAACAGCTCGTGAGGAGCTGCCCCATCTGACACTCCATCACATCTACTGATCCACTGATCTGCCAGCATGGCTAACACAGACTCTGTCAATGTCCGGGTCCTCTCTCTGAACTGCTGGGGGATCCGCTACCTTAGCAAGCACTGTCCTCAGCGCTATGCCATGATTGGAGATATGTTGTGCAGGGAAGAGCATGATATTGTCTTACTGCAAGAGgtgTGGAGTGAGAAAGACTACCTATCCTTGAAAAGGAAACTTGCCTGTAGTCATCCTCACTCTCATTACTTCAAAAGtgGAGTCATCGGCAGTGGGCTGGCCATTTTCTCCAAACACAGAATCCACGATACATTTCTTTTTCGCTACTCACTGAATGGTTATCCATACATGGCTCACCATGGAGACTGGTTTGGAGGTAAAGCTGTTGGGATGGCCATCCTAAACATTGGCAGCCTGACTGCAAATGTCTATGTTACTCATCTGCATGCAGAGTACTGCAGAGACAAGGACTCGTATCTACCTCACAGAGTGGTTCAGGCCTGGGAGCTGCAGCAGTTCATTCgCCACACCTCTGCTGGAGCAGATGTGGTGATTTTAGGTGGTGACCTCAACATGCACCCCGAGGACCTCGGCAACAGACTACTGAGGTCTTACACTGGACTCCGAGACTCTTATTTAGAGACCGCTAAATTTGATGGATGTGAGGATGGTATGACTCTCATAGCTGACAACCCTTTTATCAGTAAAAAGGAGCTTCTTCCTTTCGAGAAGGGAATTCGAATTGACTACATCCTGTTTAAGgGTTCTTCCAAAATGGACGTCTATTGTGATTTCATGTCCACCACCAAAGGCTCCGTCCCTGACCATCCATTCCCGTACTCCGACCATGAGGCTCTGACTGCTGGGCTTAGGCTGGAGACACACACTTCAACTGAGACCGGACGTGACAGGCAATCAAAGAATAAGGACTCTGCTGCAGggAAGCTGGCTGAGTTGGTCGACATTGTGACAGAGGCCCGTACTGAAGTCAAAGTGGGCTTGCACTGTGCCGAGAGCATGCGCTACACCGCCAAACGCACCGGGGTGATGGGGTTGGCTCTGCTGTTTCTGGAGGTGGCCATCGCCACCGTGCCCTGGTTGGCCCTGGGCGCAGAACAACCTTTCCCTCGTACCTCCTTCTACCTGCTGGCTGCATTGTGCTTTGCCATCCTGCTGACCACCTTTCTGCTGTACATCTTCTATACCATAGAGCTGAAATCTCTTCAGGGGGCTGAAGACCAGATGAGGCTGGCTGTAGGAAGTCTGCAAGAGAAGCTCCGGGGCTTTCCTTTGGCTCAGCCCCACAACGCCCAGCGAAGGCCCCCAAAGGCCCATGAGCCCAGTGCTTTTGACCCAGAGGAATAATACAGGAGCCAACTGGGTCAAAGTGGGCTCATTGAAAGAAGCCTTTACAGTGGGCTTTAAGATGGATGTTTGAGGAAGTCCTTCATCCTCTGAATGTGTTTTATGCTCTTGAGATTAAGATTTGTACTGCACAGTGAAGGAGCTTTTGAAGGAGCTTTCTGAAAGTAGTGCAGGACACATGCTTTGaccttttttaatactttttatataataGTCTTTTTACCCCTAGATTTCCCTCTATGCACCTCAACACGCTTCCTGTTGCATAGCATAGTACTTGCCACTGCTGTTCTTAAAGGTCATAAATGTGACCATTTGTGTCTCTAGCCTCAGGTCCGACTTGCATTCCACCAACCACTAGTTCCAGCGGGACCAGtcgtttgtttttaatttcatgcTTCCCTTTTGTGATTTGGAAAGTCCACCACACAGTCACAGTGGGTCCAGACTATGTGCTGCTGATTTACTTGCAGAAAGAAGCACTACACGGAAGACACAGACACTCCGAATGTTGACGGTTTACATTTTGGTCAGTAATATTTGTTCTCTGCAGGACAGATTGTTAGGGAGCTTCCAGGGGCACTTAAAAACAAGGATCCTCATGCACCAGTTAGGACTTTTCAGTCTAGTATTCTGTAGGAAAAGGGACAAACTTGATCTGCATGTCTCATGTTCACTGTCTTGCACCGGCAAGTATCTTAATGTTAGAGACAATCTGCACAACTCTTTTCCAAAGTataaatgtgaataaaataaCTTAAGACCTAGAAAATTAGAAATGCTTAATATATCAAGTATTATAAGTGTGCAGTGCACTTAGTTGACTAACCAGATAAACCTCTTCCCTTTTATGTAAGAAAGTAAATTACGTAATGATTCACATTGCTGTAAGACAGTGTTATGACTCAGCAAAAGCCTAACAAAGACTTGtaatttttaaactttattatttCACCTCAGTGTTGGAAAAAAGGTTATAGAATTTTTAAAACAATACCTGATGTTCATTTCAACTTAAAATTGTTATAGGCATGATtatgaaaacaataataaagAATGTATTCTCACGTT
>XM_039798775.1
CAACACAAATATTTGTATCCGTCGCTTGCGGTCGCTTGTAGGAAAAGGACGTAGCAATGGAAGTGGTCCAACACCGCTAAGTTACCGTTAGTGTTCGTTATTTGAGATGCTGCTCAACCGATTTTGATATTAATTAACTGGGAATAGTTAGCTAGCACGCTTACAAAGCCAAAACTAACATTACAGCATAATAACGGTTAGACGGTCCAGTTAACTTCAGCTGACGTCAACAGCTCGTGAGACAGAGCAAAGCCATGTCAGCACTTTGTTCTGGACTGGTGTATTGTTGCCCTCCCAGGAGAAAGGAGTGAATGCAATCGCCTCTATACTTTGTCTCtttctgaaaaaagaaaagaaaatcaacatTTCCCCCACTGCATGACACCGTGAGGCCTGTCAGGGAGCTGCCCCATCTGACACTCCATCACATCTACTGATCCACTGATCTGCCAGCATGGCTAACACAGACTCTGTCAATGTCCGGGTCCTCTCTCTGAACTGCTGGGGGATCCGCTACCTTAGCAAGCACTGTCCTCAGCGCTATGCCATGATTGGAGATATGTTGTGCAGGGAAGAGCATGATATTGTCTTACTGCAAGAGgtgTGGAGTGAGAAAGACTACCTATCCTTGAAAAGGAAACTTGCCTGTAGTCATCCTCACTCTCATTACTTCAAAAGtgGAGTCATCGGCAGTGGGCTGGCCATTTTCTCCAAACACAGAATCCACGATACATTTCTTTTTCGCTACTCACTGAATGGTTATCCATACATGGCTCACCATGGAGACTGGTTTGGAGGTAAAGCTGTTGGGATGGCCATCCTAAACATTGGCAGCCTGACTGCAAATGTCTATGTTACTCATCTGCATGCAGAGTACTGCAGAGACAAGGACTCGTATCTACCTCACAGAGTGGTTCAGGCCTGGGAGCTGCAGCAGTTCATTCgCCACACCTCTGCTGGAGCAGATGTGGTGATTTTAGGTGGTGACCTCAACATGCACCCCGAGGACCTCGGCAACAGACTACTGAGGTCTTACACTGGACTCCGAGACTCTTATTTAGAGACCGCTAAATTTGATGGATGTGAGGATGGTATGACTCTCATAGCTGACAACCCTTTTATCAGTAAAAAGGAGCTTCTTCCTTTCGAGAAGGGAATTCGAATTGACTACATCCTGTTTAAGgGTTCTTCCAAAATGGACGTCTATTGTGATTTCATGTCCACCACCAAAGGCTCCGTCCCTGACCATCCATTCCCGTACTCCGACCATGAGGCTCTGACTGCTGGGCTTAGGCTGGAGACACACACTTCAACTGAGACCGGACGTGACAGGCAATCAAAGAATAAGGACTCTGCTGCAGggAAGCTGGCTGAGTTGGTCGACATTGTGACAGAGGCCCGTACTGAAGTCAAAGTGGGCTTGCACTGTGCCGAGAGCATGCGCTACACCGCCAAACGCACCGGGGTGATGGGGTTGGCTCTGCTGTTTCTGGAGGTGGCCATCGCCACCGTGCCCTGGTTGGCCCTGGGCGCAGAACAACCTTTCCCTCGTACCTCCTTCTACCTGCTGGCTGCATTGTGCTTTGCCATCCTGCTGACCACCTTTCTGCTGTACATCTTCTATACCATAGAGCTGAAATCTCTTCAGGGGGCTGAAGACCAGATGAGGCTGGCTGTAGGAAGTCTGCAAGAGAAGCTCCGGGGCTTTCCTTTGGCTCAGCCCCACAACGCCCAGCGAAGGCCCCCAAAGGCCCATGAGCCCAGTGCTTTTGACCCAGAGGAATAATACAGGAGCCAACTGGGTCAAAGTGGGCTCATTGAAAGAAGCCTTTACAGTGGGCTTTAAGATGGATGTTTGAGGAAGTCCTTCATCCTCTGAATGTGTTTTATGCTCTTGAGATTAAGATTTGTACTGCACAGTGAAGGAGCTTTTGAAGGAGCTTTCTGAAAGTAGTGCAGGACACATGCTTTGaccttttttaatactttttatataataGTCTTTTTACCCCTAGATTTCCCTCTATGCACCTCAACACGCTTCCTGTTGCATAGCATAGTACTTGCCACTGCTGTTCTTAAAGGTCATAAATGTGACCATTTGTGTCTCTAGCCTCAGGTCCGACTTGCATTCCACCAACCACTAGTTCCAGCGGGACCAGtcgtttgtttttaatttcatgcTTCCCTTTTGTGATTTGGAAAGTCCACCACACAGTCACAGTGGGTCCAGACTATGTGCTGCTGATTTACTTGCAGAAAGAAGCACTACACGGAAGACACAGACACTCCGAATGTTGACGGTTTACATTTTGGTCAGTAATATTTGTTCTCTGCAGGACAGATTGTTAGGGAGCTTCCAGGGGCACTTAAAAACAAGGATCCTCATGCACCAGTTAGGACTTTTCAGTCTAGTATTCTGTAGGAAAAGGGACAAACTTGATCTGCATGTCTCATGTTCACTGTCTTGCACCGGCAAGTATCTTAATGTTAGAGACAATCTGCACAACTCTTTTCCAAAGTataaatgtgaataaaataaCTTAAGACCTAGAAAATTAGAAATGCTTAATATATCAAGTATTATAAGTGTGCAGTGCACTTAGTTGACTAACCAGATAAACCTCTTCCCTTTTATGTAAGAAAGTAAATTACGTAATGATTCACATTGCTGTAAGACAGTGTTATGACTCAGCAAAAGCCTAACAAAGACTTGtaatttttaaactttattatttCACCTCAGTGTTGGAAAAAAGGTTATAGAATTTTTAAAACAATACCTGATGTTCATTTCAACTTAAAATTGTTATAGGCATGATtatgaaaacaataataaagAATGTATTCTCACGTT

Function

symbol description
smpd2 Predicted to enable sphingomyelin phosphodiesterase activity. Predicted to be involved in ceramide biosynthetic process; sphingolipid catabolic process; and sphingomyelin metabolic process. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Predicted to be active in caveola and endoplasmic reticulum.

NR:

description
sphingomyelin phosphodiesterase 2

GO: NA

KEGG:

id description
K12351 SMPD2; sphingomyelin phosphodiesterase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798774.1 False 2696 mRNA 0.45 11 25974026 25984043
XM_039798775.1 True 2857 mRNA 0.45 12 25974025 25984043

Neighbor

gene id symbol gene type direction distance location
tead3b tead3,LOC103355928,LOC108231638,LOC102786312 coding upstream 1096 25938311 ~ 25972929 (+)
LOC120557320 tulp1 coding upstream 38750 25923207 ~ 25935275 (+)
LOC120558086 LOC104941373 coding upstream 90944 25878956 ~ 25883081 (+)
LOC120558084 kcna2,LOC104918376,LOC107385044,LOC101171484 coding upstream 121865 25844464 ~ 25852160 (+)
LOC120558083 LOC103356159,LOC100696388,LOC101468283 coding upstream 142115 25830111 ~ 25831910 (+)
pkp1b NA coding downstream 1107 25985150 ~ 25997555 (+)
nav1b nav1,LOC103355819 coding downstream 49708 26033751 ~ 26114173 (+)
mybphb LOC103464713,LOC107089157 coding downstream 130811 26114854 ~ 26124738 (+)
LOC120557651 LOC107089162,LOC104944127,LOC103355802 coding downstream 145551 26129594 ~ 26170085 (+)
nudt3b nudt3 coding downstream 547470 26531513 ~ 26540962 (+)
LOC120557323 NA non-coding upstream 50962 25921754 ~ 25923063 (+)
G41694 rplp2,LOC104941383,LOC104918380 non-coding upstream 86292 25885222 ~ 25887733 (+)
G41630 NA non-coding upstream 427185 25546509 ~ 25546840 (+)
G41629 NA non-coding upstream 427725 25545917 ~ 25546300 (+)
LOC120558141 NA non-coding upstream 473054 25499083 ~ 25500971 (+)
G41746 LOC103355883,LOC106954216,LOC104941313 non-coding downstream 17438 26001481 ~ 26002751 (+)
G41754 LOC102788777,LOC107089146,LOC101487148,LOC104918388,LOC100698513 non-coding downstream 42512 26026555 ~ 26027210 (+)
LOC120557409 NA non-coding downstream 238034 26222077 ~ 26252094 (+)
G41827 LOC106518302,LOC101482215,LOC102196619,LOC102290668 non-coding downstream 291079 26275122 ~ 26275929 (+)
G41834 LOC104955002 non-coding downstream 340762 26324805 ~ 26338204 (+)
LOC120558088 LOC104941431 other upstream 66287 25904769 ~ 25907738 (+)
LOC120558082 kcna10,LOC104941363 other upstream 101106 25767092 ~ 25872919 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other upstream 283090 25682407 ~ 25690935 (+)
slc12a5a LOC103355988 other upstream 663472 25208156 ~ 25310553 (+)
bloc1s1 bloc1s1,LOC102796612 other upstream 1413707 24555525 ~ 24560318 (+)
G41825 NA other downstream 284559 26268602 ~ 26273315 (+)
G41850 rps10,LOC102793608 other downstream 558464 26542507 ~ 26548799 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other downstream 668808 26652851 ~ 26764737 (+)
ephb2b LOC104917933,LOC103376520 other downstream 1686920 27670963 ~ 27823260 (+)
G42449 NA other downstream 3256370 29240413 ~ 29242253 (+)

Expression


Co-expression Network