LOC120558028 (dnttip1)


Basic Information

Item Value
gene id LOC120558028
gene name dnttip1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 44568861 ~ 44575579 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798855.1
GGGAATGACCGGAAGAGCTTCATAGAGGAAGCGCAGTGTAATTTCCTGGaaacaaacataaataaatagtcCGTTTAAATTATCGATAATCAGGTGATCAGGTGATCAGTAAACATCTGGGAGCCTCTCGGTGTCTGTCCGCGCGCTGACCCACGCTAACAAACCGGGAACGGGCCTTAAGTAACATAAACCCCGCCGTCGCTGTTAGCTATTGTTAGCTTTAGCTGCTGTTAGCCTAGCGGAGTTAGCTCGGTTCAGACCGGGTCAGGGCCGTTTGTATGATGGGCGCTCACCGCGGAGAGGGAGGTCGGGACTGGCTGCAGCAGGACGGGCCGGAGCAGCACGAGACCAGCCCGAATCCGTGGAACATGATGATCAAACACAGACAGATTCACAGAAGAGGACGGCGCTCACACATGGCAGTCAGctacaCTGATCCTCAGGTGTCTATGGATCTGTTGAGGGCGGTGCTTCAGCCGAGCTTCAACGATGACATCATGGCCGTGTTCAGGAAGTACCAGAAGTTGTTTGAGAAAGCAGCGGAGAACGTGAAGGAGAACGTTGGAGACGACATTCAGACCGACCTGCTGAtcagagagacctgcaggaaCGCTCTGGAACATGCCAAacagctgtttccagaggggGAGGCGAAGAGGGCGGGGTCAGAGGCCGCTATCAAGaGGTCCAGAGCTGCTGATGAAGACTACAGTCAGAGAGGAAGCCCCCTCCCAAAGAAGagaagaGCTCGTCCTGGAGCGGCAGCCGTCTCCTCTGATCGACCTCACACCTTCTCCACTCAAGTGAAGGTGAAGTCTGACCCAGTGAAGAAAGACGGACCTAAGTGGGATCCGTCCAGACTGAATGAAGGCAGCACGTTTGTCCTCGGCTCCAGAGCCAACAAGGCGTTGGGGATGGGCGGGACCAGAGGACGCATCTACATCAAACACTCAGATCTCTTCAAGtatgcaGCTGATGCGAAGGACAAGCAGTGGTTGGCAGAGAGACATCATATGAGAGCAACAGGAGGGAAGATGGCGTACCTGCTGATTGAGGAGGACATCCAGGATCTGTCTCGCAGCGACGAGTACAAggaCTGTCCAGACATCCAGATGTCAGAGCTGAAGCCGTTCTCCGTCCCTCTGTGGATGGTGGAGAAGATGCAGAGAGCCATGGAGGCTCAGAGAGATGCCGACCCCTGATTGGCTCAGAGAGACGCCGACACCTGATTGGCTCATTGTTCCACTGTTTTTCTTCctgctgtttttaaataaaatgaatagaattaaaaactccaaacactg

Function

symbol description
dnttip1 Enables DNA binding activity; nucleosome binding activity; and protein homodimerization activity. Located in chromosome; nucleolus; and nucleoplasm. Part of histone deacetylase complex.

NR:

description
PREDICTED: deoxynucleotidyltransferase terminal-interacting protein 1

GO: NA

KEGG:

id description
K08707 DNTTIP1; deoxynucleotidyltransferase terminal-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798855.1 True 1304 mRNA 0.53 13 44568861 44575579

Neighbor

gene id symbol gene type direction distance location
pcif1 pcif1,LOC102784095 coding upstream 2460 44546034 ~ 44566401 (+)
zgc:77375 NA coding upstream 23632 44533407 ~ 44545229 (+)
isy1 LOC106531751,LOC101464245,LOC102301427 coding upstream 35552 44527371 ~ 44533309 (+)
LOC120557218 rbm39,LOC106937047,LOC103363772,LOC103131234 coding upstream 58702 44500044 ~ 44510159 (+)
LOC120557215 mkrn2os coding upstream 82100 44482825 ~ 44486761 (+)
ube2c ube2c coding downstream 1379 44576958 ~ 44580943 (+)
snrpb snrpb,LOC101173217 coding downstream 44703 44620282 ~ 44625600 (+)
ctsa ctsa coding downstream 71751 44647330 ~ 44664201 (+)
ralgapb NA coding downstream 95010 44670589 ~ 44708952 (+)
LOC120556948 pltp coding downstream 196325 44771904 ~ 44803353 (+)
G45636 NA non-coding upstream 178660 44361162 ~ 44390201 (+)
G45640 NA non-coding upstream 195707 44370811 ~ 44373154 (+)
G45634 NA non-coding upstream 210294 44358292 ~ 44358567 (+)
G45612 NA non-coding upstream 221610 44274062 ~ 44347251 (+)
G45597 NA non-coding upstream 398816 44168532 ~ 44170045 (+)
G45831 NA non-coding downstream 138594 44714173 ~ 44714690 (+)
G45863 NA non-coding downstream 231131 44806710 ~ 44807403 (+)
G45873 NA non-coding downstream 247949 44823528 ~ 44824784 (+)
LOC120556889 NA non-coding downstream 264483 44840062 ~ 44841232 (+)
tsen2 tsen2,LOC102785813 other upstream 69565 44488956 ~ 44499296 (+)
G45635 NA other upstream 99870 44360786 ~ 44468991 (+)
G45647 NA other upstream 161412 44403903 ~ 44407449 (+)
G45577 NA other upstream 611688 43956827 ~ 43957173 (+)
G45557 NA other upstream 730009 43838384 ~ 43838852 (+)
LOC120557302 kcnq2,LOC107384874,LOC103370155,LOC108251245 other downstream 136836 44712415 ~ 44744790 (+)

Expression


Co-expression Network