cav3 (cav3,LOC107093348)


Basic Information

Item Value
gene id cav3
gene name cav3,LOC107093348
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16738036 ~ 16741512 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798912.1
tgtgtgtatacactgcctgtgtgtgtgtttgggtgccTATGTGTGTGCAGGGCGGGGGTCAGGCCTCCATTTTTACCAGGAGGTCTGCAGCAGCTGTCCACTGGCATGCAAGAGGGAGCGCCACAGTGGTGATACAGGGGTTCAGAAGTGAACCGAGGCAGCTCCGTGCAGATTGATCCAGGAAGATTTACTCTCACCATCTTCGGCCCGTCAAGGACCTGCAGCCCTATCATGGCGGATCAGTACCAGTACAACACCAACACCAATGAGGAGAAGATTGTGAAGGATAGCCACACCAAGGAGATTGATTTAATTAACAGAGATCCCAAGCAGATCAATGAGGACGTGGTGAAGGTGGACTTTGAGGATGTCATTGCAGAGCCTGATGGTACACACAGTCTGGATGGGGTGTGGAAACTCAGCTACACCACCTTTACTGTGTCCAAGTACTGGTGCTACCGCATCTTGTCTGCTGTCTTCGGTATCCCTGTTGCTCTGCTGTGGGGCTTCCTGTTCGCATGCATCTCCTTCTGCCACATCTGGGCCGTGGTTCCCTGCATCAAGAGCTGTCTGATTGAGTCGCAGTGCATCAGCCGCATCTACTCTCTCTGCATCCAGACCTTCTGTGATCCCTTCTTTGAAGCCCTGGGCAAGATCTTCAGCAGTGTGCGTGTTGCACTGCGCAAAGAAGTCTAAGAACTCACACAGTAGTGTTTATAGTATGATCGGATGAAGTGTGGTATCTTTTTATACACCAGAAGATCAGTCCTGGCATCTTGCTTACTCCCTGATACTCCTCCTCCACCCTTCATAATATGCTGTTCCCCGCCCACCCATCCTCAAGCTCTCAGCACTGAGTCCTGACATGCCCGGTGTGCCACCAGAAGCTCCGTGACAGCTGCAGCAGGCAGCGTGGTTCTGTGACAGCTCTGGCACTCCTGGAGGGCTCAGTGCTCCTCACTGAGTGAGAAGAGGGCCGCTTGCAATGAGGAAGATGTGTCTGCCCTCATTTATTTGTATCACAGAAGCTACTCATTCTCAACAAATGAAATGACCTCCCCACAATTGCTGCACCTGTGGACAATGCTGCCTGTATGCATTACATTTGGCCATTTTTAAAAGTTATATTGATGCTGTATATTGCTGTGTCTGGTATTATTTAActttatattgttttaattGGATTTGACAATCATGTATGTAACCTTATTTTAAAAATTCTAACAAAACGAATTGAATGGAACATTTTTTTCTCTACATATTTATTTGGTAATTAGTGATGACTCCATGGTAACTAAcagatacattttctgtttggAACCAACCATGCAGATAATCTACTTCCTTTTATCAAAGTGTGATGAGTGGAATATTAAACCTACTTACTATTGCACTTTTCAAGTAAGCAAGTATGTGTAAACAAGTATGGACCTACCTACTAATGGAGTAAAGTAAAAACCTCTGTATGAGACCCATCGTAATGTTCCACCgtgttatttatattatttagaAAAGTATAATACCTTTGCTGCTATTGTGCACCTGCAGTGAAGAAAATGTAatgacatatacagtacatggggTGAAACTAATTTAAAGACACTTGATGAAACCTTATAATAAGTATATTGCACCACTGGTAAAGTATGTTCTGTGTATTATTTCAATTTATTTGGAGAGGCttaagaaatacatttttaaagttcaccaaacacttcACCGTGTTTCAGTGATATCTCTTTTGCCAACTTCAGTAGAAATAGTGACCTGGGAGCTGTGACCCACTAGAGGTTGCTGTTGTGTGTGCTTCTCTTTTGTGTGAGATTCATAATTGATGTTTCAGTGTCACCACACCCTTCTTTGTTCATAACCTGTGTTTCTTTCTGGCTGACTCATTCTAGTCCTCTACTGTGCTGGAAAATGCACAGTTAGAatttataaaagcagaaacagCACACTGTGTTGAAAGTATTATTTCACTGGTTAATGAACTGCATTAACCAGTGCAATTAAGGAGCAAATTTGCCAGAACCTGTAAAGAgacattaaatataaaaatacaaccAAAGTACAGCAAGTTCTCCACAAA

Function

symbol description
cav3 Predicted to enable connexin binding activity; molecular adaptor activity; and transmembrane transporter binding activity. Acts upstream of or within muscle cell fate commitment; notochord cell development; and striated muscle cell differentiation. Located in sarcolemma. Is expressed in several structures, including adaxial cell; heart; musculature system; notochord; and pectoral fin. Used to study muscular dystrophy. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple); isolated elevated serum creatine phosphokinase levels; and muscle tissue disease (multiple). Orthologous to human CAV3 (caveolin 3).

NR:

description
PREDICTED: caveolin-3

GO:

id name namespace
GO:0042693 muscle cell fate commitment biological_process
GO:0007520 myoblast fusion biological_process
GO:0045214 sarcomere organization biological_process
GO:0060035 notochord cell development biological_process
GO:0042383 sarcolemma cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005901 caveola cellular_component

KEGG:

id description
K06278 CAV1; caveolin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798912.1 True 2089 mRNA 0.43 2 16738036 16741512

Neighbor

gene id symbol gene type direction distance location
LOC120557897 LOC104966248,LOC103368476,LOC102798401,LOC101469442,LOC105924440,LOC106583184 coding upstream 2730 16733386 ~ 16735306 (+)
gpr61l LOC104930496,LOC103368477,LOC104957521,LOC100694581 coding upstream 8020 16724159 ~ 16730016 (+)
parp3 parp3 coding upstream 15219 16718280 ~ 16722817 (+)
grm2a LOC103368479 coding upstream 21809 16683808 ~ 16716227 (+)
tex264a tex264,LOC102797020 coding upstream 56520 16606451 ~ 16681516 (+)
thumpd3 thumpd3,LOC102800238 coding downstream 155558 16897070 ~ 16906824 (+)
LOC120557149 LOC104950923,LOC103362905 coding downstream 166330 16907842 ~ 16916563 (+)
LOC120557990 LOC103362904,LOC104928138 coding downstream 176309 16917821 ~ 16962625 (+)
wdr77 wdr77,LOC102777617 coding downstream 259662 17001174 ~ 17004437 (+)
LOC120558021 LOC103362897,LOC103385872,LOC104928123,LOC104950934 coding downstream 277438 17018950 ~ 17020740 (+)
G39143 NA non-coding upstream 158314 16579085 ~ 16579722 (+)
G39134 NA non-coding upstream 181831 16552684 ~ 16556205 (+)
G39113 NA non-coding upstream 227851 16503438 ~ 16510185 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding upstream 486311 16235014 ~ 16251725 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding upstream 542252 16195379 ~ 16195784 (+)
G39195 NA non-coding downstream 40899 16782411 ~ 16782618 (+)
G39196 NA non-coding downstream 43236 16784748 ~ 16785065 (+)
G39197 NA non-coding downstream 44319 16785831 ~ 16786051 (+)
G39210 NA non-coding downstream 77234 16818746 ~ 16823256 (+)
G39302 LOC102778475,LOC101478284,LOC100692415 non-coding downstream 306423 17047935 ~ 17048365 (+)
G39116 NA other upstream 194456 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 302807 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 579674 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 677706 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 763799 15965402 ~ 15974237 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 223105 16964617 ~ 17046696 (+)
G39351 NA other downstream 370601 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 451639 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 629971 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 866418 17607930 ~ 17609216 (+)

Expression


Co-expression Network