LOC120558072 (LOC103362892,LOC104950939)


Basic Information

Item Value
gene id LOC120558072
gene name LOC103362892,LOC104950939
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17097697 ~ 17102777 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798921.1
CACACACCCTGCTCCGCTGTTTGCGCCCCTCAGATCAACTATCAGATGGTTGCATTTCCTCATCAGTGCGGACCGCAGACAGGCTTTTCCGGTCATTCTGTGCGTCCCGGTGATCGCTGCAGCTGCTGTGATGAAGAGGATGAGACTGTCCTGTAGCGGATCATCTCCAAGACCGGACTGTTGACGACTCTCCCCTTTTCTCTTCGGATCTTAAGAAACCGACAAAAAGCTCCATGACTCTCCACTGTGAAGACTAGAACACATCCAGACTGCTAGTTTATAATCCTGACAGGATGGGGGGTTCACTCTGGATTTCCCATGGTGCCACCAAAGTGTTCAGAGGAAGGAGCTTCATCACAGTTCTACCTCTGGCTTTATTGTTGCCAACAGTGAGAGTCAGTGCACAGTTAATAGGAAGCCCTCTGGACTGCAAGACTTGTGTGTGCGCCAGCAACATCGTCAGCTGTTCCAAAATGAATCTAACCAACGTTCCCACCACTCTTCCACAATATACAGCTGTTCTGGACCTCAGCTTCAACACCATCACCAAGCTACGTGCTGAGTGGACCACTAAAACACTCAGCAGACTACACAGTCTGCTGCTGAGCCACAACAGCCtcaccttcctctcctctgaggcgtttgtgtatgtgacaaagcTACGTTACTTGGACCTTTCCTCCAATGGCCTCCGCCAGCTGGACGAGTTCATTTTTGAGCCGCTGGAGCACCTGGAGGTGCTGCTGCTTTACAGCAACCGCATCTCTCAGATAGATCGCACTGCCTTCTCTGGCCTCGTCAACCTGCAGAGGCTCTACCTGAGCCAGAACCAGATCTCACGTTTCCCTTTGGAGCTGGTGAAGGAGCGGAGCCGGCTGGAAACTCTTAGACTGCTGGATGTGTCCTCCAACCGAATCAAAGCCCTGCCCCTCTATGAGCTTCAGGCTCTGCCCGCCTGGATCAAGAATGGCCTGTACTTCCACAACAACCCTCTGACCTGCAGCTGTGAGGTGCATGACATGGTGGCACGTTGGTACCTCAAGGGGCTCAGCTCAGCCACGGACTTCAAGGGCAGCCACACATGTGTGTTACCAGGCCAGCAGAAAGAGAAAATGGTCATACTGGACCTGGACAAGGTCTATTTGAACTGCAGTGAGGTCAAAATGATGGACAAAGAAACCTATCTGGAGCAGTTCCTGCTCCTGGACTGTGACACCAGGGAGAAGGACATGATGAAGAGCTGGGTGCTGCCTGGAAACATCCCACTGTCTCCAGCACACAAGACTGCTTTGATGCGTCCAGATGGCAGCCTCCAGATTGGGCCCCTGAAGGCAGAGGACTCAGGGGTGTACACCTGCTATGCCACCAGTGACTCATTTAATGAGACGCTGTATGTATCTGTAATGGTGATTAATTCCACCAAGAGTGGTGGACTGGAGAACCTAAAAACGGCTTATACCACCCTCGTAGCATGTCTGGTCAGTTTAGTTATGGTTCTCATCTACCTCTATCTCACACCCTGCCGCTGCGCCTGTTGTCCAGGTCAGGGCCTGAATAAAAGCGATCCCAGAGACAGCCTCCACTCTTCAACTGTTAGTATCACCCAGACACACGAGGAGACGGGGCAAGAAAGAATGGAAGGCGGGGGCTTCGCCTACAGACATGTGGCCTTTCTGCAACCCAAGGACCAGCTGGAGCAGAACGGGAGGTTGAACCCAATAGGCGAGGAAGACGAGGAGTGGCAGGGGGACAgcagggagagaaggaggtctGACGCAGAGTCTGTCAGCTCTGTGTGCTCCGATACCCCCATGGTGGTGTAAAAGTCAGCGGCACAGCCTGGAGGGTAAGACAGTGATGGCTCGAACCATGTGGCTATTCCACAGAGCAAGAGTGCAAGAATCAAAAGCTTTAGTTGGCTCTTACAGCTGTTGGCACTGTTACAGTAGCATGTACTGTTAAtatatgataataatattataatattagagCAATGTCttgataaaaacaatttaaaacaccCCCAAAACATTCTGATAATGCAGAGAAATGTGGTTAAAATTATTTGTGACCTAAAATATTTTGATGTATGCATTTATCTCAGTTGTCACACATGATTGCAATTGTTATTTCTATTACGTAACCTAAATCACCTtttgaaaaatgcaattaatgCTTCTATTGTTTTCAAATAGTTTTTCGTTTTACTGCAAATCATTGGCTGGCCCTGCAAGAAATTGATATGCAAGTAAAAATACAAgactttaaaatatttaaacttaaaaaaagtcCTACTAACTCTTAGCACTAAcagcagcatgaaaacagcttgCTTCTGAATAACCTGAGGCTGTaatttaaataaaggttatCCAGCTTTTATGCACTGGGGATCACAGCACTACAAAGATTAGAAGTTTTAAAGATGTTGGACAAAGGTTGCTGCTTGAAAGAGAAGCTATTTTTTATGCAGAGTTTGGAGAGTATTAACTCTGCAAGATGTTTAATATTTATGCTATGTTTTACATTCCTGTTTGGTTTTGTCAGCCTTCACAGCACACAATACTGTAAGGATTACTCTTATGCAATTTTatctatttatattattttagatTTGAGTGTGACTTAATGCTCAATTAATAATATTTGTGTTTGCAGTCCTtgagtgttttaaaaaaaaaatactacttTGTATGAAAGTCTATTTTAAGTAATTTGAGATTCCGCATAATTACAGAATCATTAACCCAGCCTTTTctgaaacattgtattttttactgTAATTCACTTTATTCAGAAATCATAATTTCTGTCAAATTTAGTTTGAAATGTTTCTCCATAGcaagaaaaaacagacaaacagataaACCAGACTACATCCAGTGTTGTGGCAGTTATTAATATAACAATGACCACATACACACTGTGGGTATTACTGGCTGATATCTAGTTGTTTACATCAATATAAATACAACTATTTACTGTTAACAGACAAATGTACATGAAATATCGATTTAAGATTAGCCAGTTATTTGACACAGTAAATGTAATTGCACGGTACGTTCCAGGTGACACTGcaaaaaatatgaaacaaagAAACACCAGAGTTCCAGTAATTGTTAGACAAAGATTTGAATTTCCTGATTGTGTgcttattttaaccattttagGCCTAATATGCAGTAATTCCCATTTTTAAAGAGACTTCATTAGTACATTAACATAACCTGAAGGGTCTGGAAAATCGTCACAGTTAAGCGCTGTCCACTGTCTGTGTACTGTAGCTGCTGCAGATTCCAGGCTCAATTGGCTCTAACTGTTTAGAAAGGGtttatcattttaaaaaaaaaatactataatGCCAATTCTAGTTTAGACTGGATACATGCCATGCGctcaaattacaaaaataaccCTACTTTATTGTTACGGTGCAGTGAAAACAATatgttacagttacagtaatagcAGCTGGGAAGCATTGCCCAAGGGAAACAACTGAGAGCGAGTACCAAATAGTGAATGCTTCTGGGCATTAGTGCCCAACCCTCAACAAATCACTAAATGCCAGCCAGCCAACCAGCCAGCCAGCAGTCTCATAAACACAGTCAGAAATAGCAGCTAGTTGTGCAACCAACACAGGCTGCCTGACGCAGACGAAATAGCAAGAAGTAGCAGATTTCAAACACGTCTTAATTTCAGTTACGTTTCTGAAATACCTTTCGATTGTTGATTTTAGAGGCTCACATCATAACTTGAATGGTGTGAGAACAAAATGGTATATGCCCACAAGGATATAAATCAGGAAATAACAGAAAATAGAGACCCGTACAAATAATGTTATCACAAACTTAAAGTCACTTTGGCTCCGTTATTGATAAATGGTGGTCACAGAACACAGTTTAAAGTAACACTActggggtggcctctagctcacccagtaagagcgtccGCCCCATGGCGGCTGAGTCCCGCAGCGGtgcgggttcaaatccgacctgctgccccttgctgcatgtcatcccccatctctctcccccttttcccttttctatccactgtcactctataataaagggaaaagcccccaaaaaagaatctttaaaTTAACGctactaataaaaatataaacataattattaatattactaattaaataataataaaagtgtgAAGCAATTTAACAGCAAAACAAACCATTCCCAGATGATAGATGTagcatgtacagtaaatgtacttttagtTTGAAGGAACCATTGTTTTTATGCGGTGACTTCTCATGGTGCCTTTTCAAGATAATTTAGGTGACTCAACACCTTTAATAAATGTATCTGTGGGAATTATAGCACTAAAATAGTCATGACATCGTGAGCCTGGTCTAATAGTATTATAAGCTACATCATGAGAAACTTCATTGACTTGTATCTCTCAAAAGGGGAGGATATCTACTGTATGCTAATGTTGTACATATGTCTTTTTCCATCTAAAACTGACTCATTATAACCAAAGACTAAGTTACATGCTAAGAATGAATAATCTACATGTTCATTGTTCACAGTTATATTGTCATTAGTATGTTGAGGTTACCTTCTGTGTTAAGCCACAAActtgtatataatatatgcaaTCCTGTATAAGGACATATTATTTTCTGTATCTTGTCTATTATTGTATTGTTCCTGTATTTCATAAACTACAAAAATATGGCAACAAA

Function

NR:

description
PREDICTED: amphoterin-induced protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798921.1 True 4714 mRNA 0.42 2 17097697 17102777

Neighbor

gene id symbol gene type direction distance location
eps8l3a NA coding upstream 54884 17034719 ~ 17042813 (+)
irf6 irf6 coding upstream 65003 17027709 ~ 17032694 (+)
LOC120558021 LOC103362897,LOC103385872,LOC104928123,LOC104950934 coding upstream 76957 17018950 ~ 17020740 (+)
wdr77 wdr77,LOC102777617 coding upstream 93260 17001174 ~ 17004437 (+)
LOC120557990 LOC103362904,LOC104928138 coding upstream 135072 16917821 ~ 16962625 (+)
LOC120557584 LOC104939527,LOC103362890,LOC102214906,LOC102790228 coding downstream 24618 17127395 ~ 17144727 (+)
cdkn1a NA coding downstream 100874 17203651 ~ 17208659 (+)
tmcc2 tmcc2,LOC102788388 coding downstream 107123 17209900 ~ 17216157 (+)
bysl bysl coding downstream 126863 17229640 ~ 17234758 (+)
ccnd3 LOC104957029 coding downstream 132443 17235220 ~ 17239904 (+)
G39308 NA non-coding upstream 15121 17080666 ~ 17082576 (+)
G39304 LOC103362894 non-coding upstream 43746 17049797 ~ 17053951 (+)
G39302 LOC102778475,LOC101478284,LOC100692415 non-coding upstream 49332 17047935 ~ 17048365 (+)
G39210 NA non-coding upstream 274441 16818746 ~ 16823256 (+)
G39197 NA non-coding upstream 311646 16785831 ~ 16786051 (+)
G39358 strip1 non-coding downstream 55126 17157903 ~ 17159236 (+)
G39427 celsr2 non-coding downstream 185662 17288439 ~ 17289516 (+)
G39433 NA non-coding downstream 195215 17297992 ~ 17298192 (+)
G39437 NA non-coding downstream 204278 17307055 ~ 17307707 (+)
G39434 NA non-coding downstream 248929 17351706 ~ 17395822 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other upstream 51001 16964617 ~ 17046696 (+)
G39116 NA other upstream 554117 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 662468 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 939335 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 1037367 16049678 ~ 16060330 (+)
G39351 NA other downstream 9336 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 90374 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 268706 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 505153 17607930 ~ 17609216 (+)
LOC120556838 NA other downstream 617664 17720441 ~ 17734011 (+)

Expression


Co-expression Network