rbck1 (rbck1)


Basic Information

Item Value
gene id rbck1
gene name rbck1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23825726 ~ 23835968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798933.1
TTCACTTTCCGTTCTACCTACTGAGAAGTGAGAGCTAGACATCGcggcagaaaaagaaaacaagtagTAGTTCAGTCTTTACTTGGCTGCGATTTTACTTCGAATTAAACATATAAACTACACGTCTTACATTTAGGTCGACTAGAGGAAGCGTGTGTTGTATGCGGACAGGACTGCAGCAACACCACCCGAGAAGGTGTAATTATGGCCTCTGAAGTTACATCGAGAGTCGAGTTGAAAGAGGCGGAGGAACTGGCCCTGTCTCTGAGTGAAGCCCTCAACAGCGGGGACGAACAGGAAGCAGTCCGACTGTGCCAGAGAATGTCACAACTGTCAGTTCCAGTGTCTGTCACGGTCCACAGTCAGGCCTACCCTCAGGACTCCATAAGGTTGCGGGTTGGAGTGGAGGATGCTCAGTCAGATGCCTACATCCCAGTGACTGTTGTGGTTTCTTGTGACATGACAATTGCACAACTTAAAGACAAGATCAGCCATGACTTTGGGTTCCTCCCCTCGCTGCAGCGTTGGGTGATCGGGAAGCGGTTGGCCCACGATCGGGAGTCGTTGTTCAGCCACGGTATCCGTCAGGACGGAGACCAGGCTTTCCTGTTCATCCTCTCCGCCGAAGCTGCTCATCTCACACGGCAGCAATACAAGCAGGACCAGGAGCAACAACGCATAGAGgGCATCGTGGAGTCAATGCAACTTTTTCCCAGAGGGCTGGGCGGAGGTGGTGGTGAGAAGACTGCTCCTCCTCCAGAGACTCAACatattcctcctcctcctcctcctaaaCCTGCCGTGCCTCCTAAACCTCAGTTGGGCTGGGCCTGTGCTATGTGTACGTTCATGAACAAACCAACTCGTCCTGGCTGTGAGATGTGTGGGGGGGACCGGCCAGAGGATTACCAGGTGCCTGACATATACAAGCCAGACCAGGAGGAGGTTCTTCGAATTCAGCAGGAACAACTGGCCATGTTGCAGTACGAACAGGCTCAGAAGGAGGAACGGGAGAGGAACTTCCTGCACTTGTTGGCAACAGAAGACCAAAACCTTATCTCCAACACCACAGAGACGGACTGTCCCATCTGCTTCTCTCCCCTGGAGCCAGAAGAGGGCATCGTGCTCAGAGAGTGTCTACACACCTTCTGCAGGGAGTGTCTAAAAGGGACAATAGTGAACAGTCAAGATGCTGAGGTGTCCTGTCCTGAGAAATGTGACAGCAAGCTACTGGATCGAGAGATCAAAGCGCTGCTCACAGAAGAGGAGCACCAGCGGTTTCTAGAGTTGCGTCTGAACATTGCAGAAAGCCGCTCAGACCACAGCTTCCACTGTAAGACCCCCAACTGTCGAGGGTGGTGCATCTACGAGGACGAAGTCAACGAGTTCCACTGTGAACTCTGCAATGAAACCAACTGCATTCTCTGCAGGgccATCCATAATGGCATGAATTGCAAGGACTACCAGGATGACCTGCGCATCCGAGCAGAGAACGACCAGGCGGCTCAGCAAACTAAGCAGATGCTAGAGAGCATGCTACAGAATGGAGAGGCCATGAAATGTCCACGGTGTGACATCATCGTCCAGAAAAAAGATGGCTGTGATTGGATCTGCTGTTTGATGTGCAAGACAGAAATCTGCTGGGTCACCAAACAAGCTCGCTGGGGaccaaatGGCAGTGGCGACACATCTGGGGGCTGCAGATGCAGAGTCAATCATCAACCTTGCCATCCCAACTGCCAAAATTGCCACTGAGGGAAGCACACTAATGACCACACTGCTGCAATCACATGCAACATCTGATGAAACGCAGACCTTAGCTGATGCTTGGGCCGTTAATGCTGTCAATGCTCTGTGTTCTTCACTTCCTTTTAGCATTGTTTTTAATGGTATAGTGACAAGACACTGTACTTTGTTTGTGCAGTAGCAATGATGCAATATGAATGCTATACACAAAGCTATACAAACTGCCAGCGCTATCTACTACATCTCTACAGCTGAGGatactaacaaaaaaaaagctttactgGGATCTTCTGCTATAAAAATCCTTTGCTGTCAGGAATTAATGCTTAGTATACATTTGACCGCCGGCTACTGCTTTCATCACAAGTTTGATGAGCCAGCAATCCTATTGCGTGAGCTTGAGTTTAATTCAAAACTTGACCGGATAAACACACCAAAATATCCTTTTaatctttttaaacaaaaatgcaaaaaaaaggcTTATActcaaatacagtatataaatatgTCACCCCACAGCTAACAACTACATAAATATTGtattcttgtttctttcttgtgTTATGGCTACAACTAATTAACTACAACTAACAATAACATTAATTTATGAttcgatttttatttttaacaactCTAGTCAATATAACACAGGAGTGAGTGTTACGATTGCTGGATATTTTCCTGGAAGTGATATCTTCTTAAGTAAACtgaccaaaatgttttttgaagtTGTAACCACTGTATGTTTGCGGACTAAAATATTGATTTACTATCAGTACTATAAAAGCAATAGATTTTCTTTCAGTCGACTAATCAGGCTGTGGTGAAGGATTGTTTACGATGAATAATTGTGTTCATAAAGGAAAACGAGCTGCTCTGGAGCAATTTTCTCCATAATGCATAATTAATGCTGTATTTTGTGTCTTGTATTCAGGACTTTAACTGTAGTTCTTCCCTCTTCTCATTCTTCAAGAACTACAGTAATGAATGTGcttttacatacatacaatatatttgtttatgtcCGGTAGCCATGAAGTTTGTTGGgcgtcacatttttttttaaagagacatGCCTCAACTCCCAATAAACTGGAACCACAAGTATATCATGATAGCATTATTGTAACATAATGAAAACTATGTTTACATTGAGCTTAAAGAACAACCAGTCGGACAAAggacagctgaggctgatgaagTGTAGCTGAAGCTGAAAAAGGCCCACTCAATACAACAGGATAGCTGAAGCTGTTGAGATAAACTTGACAAAGTATAGTTCTGACATTTTCCCAAAATGGCCAATGTACGgttattaaaaatacattta

Function

symbol description
rbck1 Predicted to enable ubiquitin binding activity and ubiquitin-protein transferase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be part of LUBAC complex. Is expressed in pharyngeal arch. Human ortholog(s) of this gene implicated in glycogen storage disease. Orthologous to human RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1).

NR:

description
ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0016567 protein ubiquitination biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0071797 LUBAC complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10630 RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798933.1 True 3076 mRNA 0.45 13 23825726 23835968

Neighbor

gene id symbol gene type direction distance location
tox2 tox2,LOC104948894,LOC108231505 coding upstream 160113 23571602 ~ 23665613 (+)
LOC120557289 wnt2b,LOC104945808 coding upstream 321021 23493752 ~ 23504705 (+)
cttnbp2nla cttnbp2nl,LOC102311171,LOC100709543 coding upstream 337739 23473348 ~ 23487987 (+)
LOC120557228 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 518660 23282142 ~ 23307066 (+)
timm17a timm17a,LOC102789540 coding upstream 544997 23274429 ~ 23280729 (+)
LOC120558070 cdh22 coding downstream 136425 23972393 ~ 24165819 (+)
gcnt7 gcnt7,LOC102795321,LOC102207891 coding downstream 605344 24441312 ~ 24449369 (+)
eya2 eya2,LOC103355465,LOC102207428 coding downstream 654891 24490859 ~ 24521308 (+)
rdh5 rdh5,LOC104964277 coding downstream 725737 24561705 ~ 24567422 (+)
gls2b LOC103355460,LOC104964278 coding downstream 732523 24568491 ~ 24583147 (+)
G41231 NA non-coding upstream 457375 23367385 ~ 23368351 (+)
G41220 NA non-coding upstream 467641 23337333 ~ 23358085 (+)
G41207 NA non-coding upstream 544533 23280937 ~ 23281193 (+)
G41126 NA non-coding upstream 570199 23254942 ~ 23255527 (+)
LOC120557222 NA non-coding upstream 592768 23232172 ~ 23232958 (+)
G41291 NA non-coding downstream 730 23836698 ~ 23836903 (+)
G41308 NA non-coding downstream 10825 23846793 ~ 23847938 (+)
LOC120556870 NA non-coding downstream 32403 23868371 ~ 23870584 (+)
G41346 NA non-coding downstream 440092 24276060 ~ 24276910 (+)
G41354 NA non-coding downstream 583233 24419201 ~ 24421883 (+)
cbfa2t2 cbfa2t2 other upstream 53794 23734948 ~ 23771932 (+)
itga7 itga7 other upstream 1833115 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 2482015 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 3677036 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 3902177 19917889 ~ 19923549 (+)
znfx1 NA other downstream 12079 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 719557 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 1372188 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 1846439 25682407 ~ 25690935 (+)
LOC120558082 kcna10,LOC104941363 other downstream 1931124 25767092 ~ 25872919 (+)

Expression


Co-expression Network