LOC120558086 (LOC104941373)


Basic Information

Item Value
gene id LOC120558086
gene name LOC104941373
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 25878956 ~ 25883081 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798943.1
ACCGATAGCTCCGGCGAAACCGTAAACAAGTTACATTCTGACGTCTGAGCTCACATGCAAAGCaggaagacttttttttattttcccccTCGTCCCCGCCCACTTTGAGATATTCGGCCTAAATATGACGATACTGTAGGCGGCTGCAGGTAAGAAAGGCGGGCGGAGATGTGTCCATATGTGTGAGGAGATAGTGAGCAGTCGTCCCACCATGGAAACACAGACCGAAACACAAAGGCCCAATAACGGCCAATTGATTTTTGTGCCTCACAAGGATACAATCCGTCTGCTGGAGGTGTACGTCAAGCGCAGCCTCAGCGTAAATGACGGGACACTGGGGCATAAGAGGGCTGGGCGGAAAGAGAAGTGGGTGACAATGCCAAGAAAGCTAAGACGACATTCCAGCGACCCTTCCCTTCACTTGACCGATGGATTAAACGACAACAAAATTGGTACATTTTCTGCGGTCGAACTTCCCGCAGCTCCGCCTGAGAAACGTCCTGAGGAAGCAGAGAAACTCgccaaaaagtcaaagaagaacaagaagccctcaaacaacaacaacatttgtACACTTTCTGCGGTCGAACTTCCCGCAGCTCCGCCTGAGAAACGTCCCGAGGAAGCAGAGAAATCCaccaaaaagtcaaagaagaacaagaagccCTCACTTTGGAAAAGTTTCCTTGGTATTTTCTCTCGGAAGAGTGACGAGGAGATAGATGAAGAGCTGGACGGTCCATTAGAGATGGCCAAGGCCACCTCAGCAGAAGACACTGTGGTAACCTGCCTGCCCATATCTCCAGACCTTTCACCAAGAATAAAGCCCATGAGGAAAAAATCCATAAAAAGAAGGTTCTCCAAAAGGGGGTTATCTTTTACAAAACCAAATAAACCTGGTAAAGATCTCCACCCTGCTGACATCACTCGAGTTGAAGCTGTCGTCAGCGTGGAACCAACAGAATATTACTATGAGAAGGTGTCAGAGGAACTGGAAAAAATTGTTCACGAGGTGCAAGGAAAAGAGGAAGTTCAACCTCTCTCTAATGAGGAAGTTATCGACAGGATCATTAATTTAACAAAGGAGGAGGGTGACGCCATAGATATCAAGCTGAAAGACAACCCCACCCTGAACAGCTTCTTTCAAGGGATGTCATACTCTTCATTCCAGAAGTTGGCTGATGCGTATCTGGAGACAGAAGCATCGCCGACCCACAATCCTCCCACTGTCCTACCGACAGCGCCCGAGCTGGTCAAGTTGGCCTTTACGCTGGACTTTACTGCCAGGATTGCCGGGCTCTCCAAACAGAATATAGGTCACATCACTGGCCTGGGGCACCGTTATCTACAGGACCGATTTAAATACCAACAGGCATGTACAAATCATCCAGGGTCCAACAGTGATGTCTGAGAACCAGCCATTCAAAAACAAGCCATTTTTCAAGCCGTTGCTGCAAGTGAAGCATTCAACTTTTTCTCAGGATGTTTTGCAAGCATGAATTTCCCCTTTTGAGATCACAGTGGGGTAACTCACACAACAAGTTTTAAGCTTGTAAACGAGAAATTGTTGGCATTAACATTTGAGTGTGCACTTCTCAAAGTGTTGACTCATGTCCTTCACATGTAAGATCACAGTCCTTAAACATGACGCAATATTTTTGACTCACAAATAGCTGATTCTACAATGACACTAAtcatgtgatgtttttttctttgttacaAATCCACCATTGAATTCTATACTTCCTGTATATTGTTTTGTAATTATACGAAGGAGCAATGCAATAACTAACTAACAATAACTATAAGCTATAAGACACCActgtgcaatatatatatatatatatattttatatatttctaggattttaaaatgtcaagCTTTATTTAATAGAAGCTAATTGAAATGTGACATGAACGCTGGCGTTCATATTACATGTTTGAAAGAtgatttaatgctcaaattaaatttgtttttttgtatttatgacACCGTATATTTCTGTCAAGCTTTACTCTTTGGTAATTGAACTTATGTCTCTTGAACTGTGTAACTCTTTGCAATAAATAGAGCAATGCAAAATCAAGGCTTGCTGAAACAGGCCCGCTAATGGCA
>XM_039798944.1
CCGATAGCTCCGGCGAAACCGTAAACAAGTTACATTCTGACGTCTGAGCTCACATGCAAAGCaggaagacttttttttattttcccccTCGTCCCCGCCCACTTTGAGATATTCGGCCTAAATATGACGATACTGTAGGCGGCTGCAGGTAAGAAAGGCGGGCGGAGATGTGTCCATATGTGTGAGGAGATAGTGAGCAGGTAAGTCCCTTCATGACAGAGACTACTTTAGTCGCATTCAGTACTCTGCAGGGACAGTTCTAGACCTACTGTTGCTGAAGGAGACGAGTCGTCCCACCATGGAAACACAGACCGAAACACAAAGGCCCAATAACGGCCAATTGATTTTTGTGCCTCACAAGGATACAATCCGTCTGCTGGAGGTGTACGTCAAGCGCAGCCTCAGCGTAAATGACGGGACACTGGGGCATAAGAGGGCTGGGCGGAAAGAGAAGTGGGTGACAATGCCAAGAAAGCTAAGACGACATTCCAGCGACCCTTCCCTTCACTTGACCGATGGATTAAACGACAACAAAATTGGTACATTTTCTGCGGTCGAACTTCCCGCAGCTCCGCCTGAGAAACGTCCTGAGGAAGCAGAGAAACTCgccaaaaagtcaaagaagaacaagaagccctcaaacaacaacaacatttgtACACTTTCTGCGGTCGAACTTCCCGCAGCTCCGCCTGAGAAACGTCCCGAGGAAGCAGAGAAATCCaccaaaaagtcaaagaagaacaagaagccCTCACTTTGGAAAAGTTTCCTTGGTATTTTCTCTCGGAAGAGTGACGAGGAGATAGATGAAGAGCTGGACGGTCCATTAGAGATGGCCAAGGCCACCTCAGCAGAAGACACTGTGGTAACCTGCCTGCCCATATCTCCAGACCTTTCACCAAGAATAAAGCCCATGAGGAAAAAATCCATAAAAAGAAGGTTCTCCAAAAGGGGGTTATCTTTTACAAAACCAAATAAACCTGGTAAAGATCTCCACCCTGCTGACATCACTCGAGTTGAAGCTGTCGTCAGCGTGGAACCAACAGAATATTACTATGAGAAGGTGTCAGAGGAACTGGAAAAAATTGTTCACGAGGTGCAAGGAAAAGAGGAAGTTCAACCTCTCTCTAATGAGGAAGTTATCGACAGGATCATTAATTTAACAAAGGAGGAGGGTGACGCCATAGATATCAAGCTGAAAGACAACCCCACCCTGAACAGCTTCTTTCAAGGGATGTCATACTCTTCATTCCAGAAGTTGGCTGATGCGTATCTGGAGACAGAAGCATCGCCGACCCACAATCCTCCCACTGTCCTACCGACAGCGCCCGAGCTGGTCAAGTTGGCCTTTACGCTGGACTTTACTGCCAGGATTGCCGGGCTCTCCAAACAGAATATAGGTCACATCACTGGCCTGGGGCACCGTTATCTACAGGACCGATTTAAATACCAACAGGCATGTACAAATCATCCAGGGTCCAACAGTGATGTCTGAGAACCAGCCATTCAAAAACAAGCCATTTTTCAAGCCGTTGCTGCAAGTGAAGCATTCAACTTTTTCTCAGGATGTTTTGCAAGCATGAATTTCCCCTTTTGAGATCACAGTGGGGTAACTCACACAACAAGTTTTAAGCTTGTAAACGAGAAATTGTTGGCATTAACATTTGAGTGTGCACTTCTCAAAGTGTTGACTCATGTCCTTCACATGTAAGATCACAGTCCTTAAACATGACGCAATATTTTTGACTCACAAATAGCTGATTCTACAATGACACTAAtcatgtgatgtttttttctttgttacaAATCCACCATTGAATTCTATACTTCCTGTATATTGTTTTGTAATTATACGAAGGAGCAATGCAATAACTAACTAACAATAACTATAAGCTATAAGACACCActgtgcaatatatatatatatatatattttatatatttctaggattttaaaatgtcaagCTTTATTTAATAGAAGCTAATTGAAATGTGACATGAACGCTGGCGTTCATATTACATGTTTGAAAGAtgatttaatgctcaaattaaatttgtttttttgtatttatgacACCGTATATTTCTGTCAAGCTTTACTCTTTGGTAATTGAACTTATGTCTCTTGAACTGTGTAACTCTTTGCAATAAATAGAGCAATGCAAAATCAAGGCTTGCTGAAACAGGCCCGCTAATGGCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104941373

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798943.1 False 2116 mRNA 0.43 6 25878956 25883081
XM_039798944.1 True 2203 mRNA 0.43 6 25878957 25883081

Neighbor

gene id symbol gene type direction distance location
LOC120558084 kcna2,LOC104918376,LOC107385044,LOC101171484 coding upstream 26796 25844464 ~ 25852160 (+)
LOC120558083 LOC103356159,LOC100696388,LOC101468283 coding upstream 47046 25830111 ~ 25831910 (+)
slc25a55a LOC104918372,LOC102313117,LOC102207676,LOC102783067,LOC100695863 coding upstream 150574 25722791 ~ 25728382 (+)
tshba LOC100534562,LOC102782486 coding upstream 159956 25717205 ~ 25719000 (+)
sycp1 NA coding upstream 176588 25693331 ~ 25702368 (+)
LOC120557320 tulp1 coding downstream 40126 25923207 ~ 25935275 (+)
tead3b tead3,LOC103355928,LOC108231638,LOC102786312 coding downstream 55230 25938311 ~ 25972929 (+)
smpd2b smpd2,LOC102787414 coding downstream 90944 25974025 ~ 25984043 (+)
pkp1b NA coding downstream 102069 25985150 ~ 25997555 (+)
nav1b nav1,LOC103355819 coding downstream 150670 26033751 ~ 26114173 (+)
G41630 NA non-coding upstream 332116 25546509 ~ 25546840 (+)
G41629 NA non-coding upstream 332656 25545917 ~ 25546300 (+)
LOC120558141 NA non-coding upstream 377985 25499083 ~ 25500971 (+)
G41570 NA non-coding upstream 564697 25313719 ~ 25314259 (+)
LOC120558031 NA non-coding upstream 765780 25099287 ~ 25113176 (+)
G41694 rplp2,LOC104941383,LOC104918380 non-coding downstream 2141 25885222 ~ 25887733 (+)
LOC120557323 NA non-coding downstream 38673 25921754 ~ 25923063 (+)
G41746 LOC103355883,LOC106954216,LOC104941313 non-coding downstream 118400 26001481 ~ 26002751 (+)
G41754 LOC102788777,LOC107089146,LOC101487148,LOC104918388,LOC100698513 non-coding downstream 143474 26026555 ~ 26027210 (+)
LOC120557409 NA non-coding downstream 338996 26222077 ~ 26252094 (+)
LOC120558082 kcna10,LOC104941363 other upstream 6037 25767092 ~ 25872919 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other upstream 188021 25682407 ~ 25690935 (+)
slc12a5a LOC103355988 other upstream 568403 25208156 ~ 25310553 (+)
bloc1s1 bloc1s1,LOC102796612 other upstream 1318638 24555525 ~ 24560318 (+)
znfx1 NA other upstream 2011444 23848047 ~ 23867512 (+)
LOC120558088 LOC104941431 other downstream 21688 25904769 ~ 25907738 (+)
G41825 NA other downstream 385521 26268602 ~ 26273315 (+)
G41850 rps10,LOC102793608 other downstream 659426 26542507 ~ 26548799 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other downstream 769770 26652851 ~ 26764737 (+)
ephb2b LOC104917933,LOC103376520 other downstream 1787882 27670963 ~ 27823260 (+)

Expression


Co-expression Network