parp3 (parp3)


Basic Information

Item Value
gene id parp3
gene name parp3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16718280 ~ 16722817 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798960.1
GTAAAGTGTGTCAACTTCCCGAAAATCTCAGACAGTCAGACAAACAGACACCAGTCACACAGTGACAGCTTGGGCAGCGGGGAGACTGTCGGTCTGTTCGTCTActttcctctctccctgcccGGCTGACACTATTTAAAGTTAACAGGGGTTGAAGCCAGGATCATGGCACCAAAGAGAAGATCTTCTTCTGCTACCAAGGCAGGTGGTAAGAAGGTGAAACAGGAGCCTGAGACACCAAAGCCCAAGGATGCCTTCACCTCTGCAAAAGAGGCCCTTCTTGCTGCAGGTACACAGGTAAAAGGCAAGAGGAAGGTGGATGAGTATGTCACAGCGTTCACTGGAGAGGTGTACAAGGACTATGACTGCATGCTCAATCAGACCAACATTGGGAATAACAATAATAAGTTTTATGTCATTCAAGTTCTTAAAAATAACACTGATTGCTGTACATGGAATAGATGGGGCAGAGTGGGGGAACGTGGGCAAATGAAACTTACAAGGTTTGATACGCTTGAGAATGCTGTCAAGGACTTTGAGAAAAAGTTTAAGGACAAGACCAAGAACAACTGGAGCAATCGGTTGGACTTTGTGTCTCACCAGGGGAAGTACACCCTGATCGAGGTGGACGGAGAGCAGGATGCTGAGGTCAAGGTGGACACTGTCGATGGAAAGCATGTCAGTAAAAATGTCCAAGCTTGCACCCTTGATAACCCTACCAAGAAGCTCATAGAGCTAATCTTCAGCAATGACATGTTCAAGGAGGCGATGGAATGTATGAACCTAGACATCAAGAAGATGCCTTTGGGCAAGCTCAGTAAGATTCAAATTGCAAAGGGCTTTGAAGTGTTGGAGGAGATTGAGGCAGCCATTAAccaaaaaagcagaaacaactGTCTGAAAGAACTTTCCTCAAAGTTCTTTACCACAGTGCCACACAACTTTGGCCGGAACAGACCGCCAATCATCGACGACCAAGAGATtgtggagaaaaagaaagagatgcTTATGGTGCTGGCTGACATAGAGCTTGCCCAGACTCTGAAGTCAGAGACTGAAAAGGCTCAGGAAGAGATGATAGAGACAGTGACAGTTCCTCACCCCCTAGACCAGGACTACAATTCTCTCAAATGCAGTCTCACTCTAATGGACAAGGAGACAGAAACATTCAAGatcataGAAAAATACCTGAAAGTGACTTCAGGTGGCTATTCTAACCCAAAAATTGTCAATGTTTGGGAGGTCGATCGTGAGACAGAGGGAGAGCGATTTAGCGAGAATGATGGTCTGGAGAACCGCCGTCTGCTTTGGCATGGTACAAACATAGCGGTGGTGGCAGCTATCCTGAAGAGCGGTCTGAGAATAATGCCCCAATCAGGAGGCCGTGTTGGTAGCGGTATCTATTTTGCATCTGAAAACAGCAAGTCTGCATGTTACGTGCGAACCTCTAAAAATACTGGAGTGATGTTTTTGAGCGAGGTAGCCCTCGGCAAGGAATACACCATCACGAGAGACGACTGCTCCTTGAAGAAGGCTCCTGCAGGCTTTAATAGTGTGGTGGCACGAGGATCAGTGGAGCCAGATCCATCCAAGGACATCTTCATCACCCTGGAGGGAAAGAAGATTGCTGTGCCTCAGGGCAAGCCCATAGATCAGCCCCAGTTCTCAGACAGCAACTTCAGCAACAGTGAATATCTCATCTACAAAGAGAGCCAGTGTCGCATTCGCTTCATGCTGGAGCTTGACATGAAGTAATTATTCAACTCAAGCAAAGAAGCAGGTCTTCTGAATTAGAAAAGTTCCTCATTACCTCTATATTTCTAAAAAGCTTGGCTATGCTGTTTTCTTATAATAATATGGTTATTGTCCTTATTACCGTTAATGTGCATATGTCCCTACCATGATTCATGAATGACTCGTACTTCTCTGTGCCTTATATTTTGCAAACTGGCCTGAGTGTGATGGACTGCACTTCAGTTACACTTCTGGTTTGAGAAGCTTACCTTTTAAATATTGCATTGTTTAATCTAAGTGATAACGCTCATATAAACCTAAAAGAGAAATATATTTGATGTGTACTGTAGGAGGACTTTGCCACATGCCTTTTCAGTTATAAACATTTTGACTAATGTTATATAGTAGAGCAGAAATAAAGCTGATACTCTATGCATAGATATGTTTACAGGCAGAAGTATGAAGTGCAATTTGTGGTTAATGTTCAAGCACTCttacaaatagaaaaaaaagcatctgAAAGTGCTTCAGCTATGCAAAGTAATCTACTGTAAGATGTAAGTCATGACTAGCTTGGCCATATTCCTTGCCCAGTAAGTCTTCTAGCTGTATGTAATAAATGGCACTCCCTTTGGAATGTAATTGCCTCCGCATTTTTGCACATTACACTACATTACTTAAACCAATGATTAGTTAATAAACTAAAGTGCCCCTTCCA

Function

symbol description
parp3 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Acts upstream of or within ectodermal placode development and regulation of neural crest formation. Predicted to be located in nucleus. Predicted to be active in nucleolus and site of double-strand break. Is expressed in axis and notochord. Orthologous to human PARP3 (poly(ADP-ribose) polymerase family member 3).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0090299 regulation of neural crest formation biological_process
GO:0006471 protein ADP-ribosylation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798960.1 True 2452 mRNA 0.44 11 16718280 16722817

Neighbor

gene id symbol gene type direction distance location
grm2a LOC103368479 coding upstream 2053 16683808 ~ 16716227 (+)
tex264a tex264,LOC102797020 coding upstream 36764 16606451 ~ 16681516 (+)
fancd2 fancd2 coding upstream 112865 16584412 ~ 16605415 (+)
usp4 usp4,LOC102796025 coding upstream 140065 16566701 ~ 16578215 (+)
emc3 emc3,LOC101173295,LOC101079695 coding upstream 151885 16562865 ~ 16566395 (+)
gpr61l LOC104930496,LOC103368477,LOC104957521,LOC100694581 coding downstream 1342 16724159 ~ 16730016 (+)
LOC120557897 LOC104966248,LOC103368476,LOC102798401,LOC101469442,LOC105924440,LOC106583184 coding downstream 10569 16733386 ~ 16735306 (+)
cav3 cav3,LOC107093348 coding downstream 15219 16738036 ~ 16741512 (+)
thumpd3 thumpd3,LOC102800238 coding downstream 174253 16897070 ~ 16906824 (+)
LOC120557149 LOC104950923,LOC103362905 coding downstream 185025 16907842 ~ 16916563 (+)
G39143 NA non-coding upstream 138558 16579085 ~ 16579722 (+)
G39134 NA non-coding upstream 162075 16552684 ~ 16556205 (+)
G39113 NA non-coding upstream 208095 16503438 ~ 16510185 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding upstream 466555 16235014 ~ 16251725 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding upstream 522496 16195379 ~ 16195784 (+)
G39195 NA non-coding downstream 59594 16782411 ~ 16782618 (+)
G39196 NA non-coding downstream 61931 16784748 ~ 16785065 (+)
G39197 NA non-coding downstream 63014 16785831 ~ 16786051 (+)
G39210 NA non-coding downstream 95929 16818746 ~ 16823256 (+)
G39302 LOC102778475,LOC101478284,LOC100692415 non-coding downstream 325118 17047935 ~ 17048365 (+)
G39116 NA other upstream 174700 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 283051 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 559918 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 657950 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 744043 15965402 ~ 15974237 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 241800 16964617 ~ 17046696 (+)
G39351 NA other downstream 389296 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 470334 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 648666 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 885113 17607930 ~ 17609216 (+)

Expression


Co-expression Network