LOC120558103 (slc6a6,LOC103364884)


Basic Information

Item Value
gene id LOC120558103
gene name slc6a6,LOC103364884
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30821681 ~ 30873506 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798972.1
ACAACGATGAGGAGAAATAGTGCCCCGATGCGTGTTAAGAGTTGACTTCATGTAGTCTATAGGCTACCAGCGGATTTTGGAAAGATGCACCGATGTCACAGTCCGCATCACTTCCAATTCCACTTGGTGCCGTTTCGCTCGCGTAGCGCGCACTTGACAGAGTGACTTGACAGTCAGAGGCGGGCCCTAATGCAGGAGGAGGCAGGCCGGTGTTTTTCCACTGCCGCGGATGTCTCATGTCCCCCCTGTTCCGAGAGACAAAGGTCAGAAAGAGAGGCTTATAAACACTCTAAAATATAGTCCACCGACGCGTCCAGCCCTCAGTCGCTCTCACGGACACAGGAGGACACGGACAAGACGAACCGTGCAAGGGACCACGCTCAAAGGACATTAAAAGGacaaaataatatacaaaattACATCTACAGAGCagAATGGCTCAAAAAGAGAAACTTCAGTGCCTGAAGGATTTCCATAAGGACACTCTGAAGCCGTCTCCTGGTAAAAGCCCTGGCACCCGGCCTGAAGACGAGGCAGAGGGCAAACATCCCCAGCGGGAGAAGTGGGCCAGCAAGTTGGACTTTGTTCTGTCTGTAGCTGGCGGCTTTGTTGGTTTAGGGAACGTCTGGCGTTTCCCGTACCTCTGCTACAAGAATGGTGGAGGTGCATTTCTCATCCCCTACTTCATTTTCCTGTTTGGCGGAGGTCTGCCGGTCTTCTTCCTGGAGGTTGCCCTGGGTCAGTTCACCTCTGAGGGTGGCATCACCTGCTGGGAGAAGCTCTGCCCCATCTTTACTGGTATTGGTTATGCCTCAGTCGTGATCGTGTCCCTGCTGAATATCTACTACATTGTCATCCTGGCCTGGGGCCTCTACTACCTGTTCCAGTGTTTTCAGCCGGAGCTGCCCTGGGCCAAGTGCAATCAGTCCTGGAACACCGATCGCTGCATTGAGGACACCTACCGCAAGAACAAATCCCTATGGCTGGCCGCCAACGCCACCAACTTCACCTCCCCTGTCACCGAGTTCTGGGAACATAATGTGCTGGGTATCACCAGTGGTATAGAGGATATTGGTCCTGTTAAATGGGACCTGGCTCTGTGTTTACTGCTCGTCTGGGTCATCTGCTTCTTCTGCATCTGGAAGGGAGTCAAGTCCACTGGCAAGGTGGTCTACATCACAGCCACGTTCCCATTTGTCATGCTCATCGTGCTGTTGATTCGTGGCGTAACACTGCCCGGTGCTGCTGCGGGCATCAAGTTCTACCTGTACCCTGACCTCGCTCGTCTGAAGGACCCAGAGgtatggatTGATGCCGGCACCCAGATCTTCTTCTCCTATGCCATCTGTTTGGGCGCCATGACATCCTTGGGGAGCTACAACAAGTACAAATACAATTGCTACAGGGACTGTTTGCTGCTGGGAGCCCTCAACAGTGGTACCAGTTTTGTGTCTGGcttcgcaatattttccgtccTGGGCTTCATGGCACAAGAGCAAGGGGTGGACATTGCTGATGTGGCAGAGTCAGGCCCAGGCCTGGCGTTCATTGCCTACCCTAAAGCTGTTTCCATGATGCCTTTTCCTACAGTCTGGGCAATTCTCTTCTTCattatgctgctgctgctgggcctCGACAGTCAGTTTGTGGAGGTGGAAGGGCAGATCACATCACTGGTGGATCTGTATCCGTCCTTCCTAAGGAAGGGTTACCGCAGAGAGATCTTCATCGCTATCATCTGCTGCATCAGCTACCTGCTTGGACTTACCATGGTTACCAAGggtGGCATGTATGTTTTCCAGCTGTTTGATTACTATGCAGCTAGCGGTGTGTGCCTTCTGTGGGTGGCATTCTTTGAATGTATAGCTGTTGCCTGGGTTTATGGCGTTGATAATTTCTATGATGCACTTGAGGACATGCTTGGCTACAGACCAAATCGTTGGATGAAATGGAGCTGGAGTTTCATCACTCCTTTACTGTGCATGGGCTGCTTTATCTTCTCCTTGGTCAAATACAAGCCGCTGACATACAACAAGGTCTACGAGTATCCGGACTGGGCCATCGGAATAGGTTGGACTCTGGCCCTGACCTCCATGATCTGCATCCCCATGGTGGTTGTCATCAAGATCATCCGATCTGATGGGCCGCTCATTGAGAGGATCAAGGCGGTGGCCGCCCCGGTTCGCGGCGGGGCCAGCTCTCGTCCTGCAGACCACCGTGGCCTCAAGGAGCTCTCCTACCCGCTGGACCCCAACGGGAACAAGGGCCTGCTGATGAAGGCCCCCACCCACACCATTGTAGAAACCATGATGTAAAGGAATGAGGCGGAGGCTCTCCATGAGAtcgctctcctctcctctcctgtcctgtcctctCAAACGCTTCTAAAGCTAGCTAgttctctgtctatctgtctgtctgtctgtctggtggACTGATAAGGgttttaaggaaaaaaaaaaaaaataggttccCATTTCAAATGTTGTAGGAATACTTTGGAAGTAGTTTGCTCTCGGTGGGTTTTCTTAAGAGGGTGGCAATCACATTTCAAATCTTTTTCTGAATGACTGGTGCTggtccttttttttccctcctattTGTAACATCCATGTGACTACATGTCCCACTATTGTCTTGTTTACAGGCAGAGTGGCAAATGCGCACCAGCCTCTGGTCATCCGCTGGTACCTATCTATGTTTTGTTACACCAGCTACTTTTGCAGAAAACCAGCCattgttctaaaaaaaaaaaaaagaaaagaaaaaaaagaaggaagaagTGGTTATTGAGTCTTGGAATCAAACAGCCTTTTGTAGCCACAAAATGGGAAAAAAGAGAGGTTTCTGACATTGATCACAGATCACCAGTTTTTGGCGCTGTTCTTGGAATACAACAGCTCTTTGTCTGCATTTCAGTGAACACGGTGCACTTATCTGAGCGCGTGTGCCGTAGGGTTCGACTTTGGCTTTTTCTGTTCCGCTGCGTTCAGCAGAGGCCCAGTTGAGATGAGGCCGAAGATCGAGGCACTGCAGGAACAGCGTTATTAATTAAGAAACGTGTTTTCTACCCATGTCACAATTAGACATAGACGGGTATAAAGTCCCCCTTCAGTAATCAGACCTCCGGATTGTGatatttcagctgcacaaggcAAGATGTTTTCGTGAGAAATGTGACCAAACTTTACCATCCTAAATTTCAAAATGTGGCTGTCGCAGGGGAAGTTTCCCAATCCTACGAATGGTACAACCTGTagattgattgtttttttgttttttttttctttctgtgttctCACTTGGAGCTCCTAATACACAACATTGCCTGGTGCAGCTAAAAAGAAAGATTAAACAAATAGTATAATTGACACAGCAGTGATAGCCGATGACTCTTATCAAACCAGGGtatcctgtttgttttttttaaatgcacctTAGCACAAATATCCCCATCTTCCATAGCCATAAGCTATGGGACAAAGAGAGAACTTGCACTGAAACTCGCTcctgcacagagagagaggtatcTGAAAGGATTTGAAGTGTGGAGGTTGAACCCTTGAGTGTGTTGTCTGTGGCGTACTGTACAGTAGTAGCTAAACAGTCTGTATCTATCTCTTTATCTATCTTTCTCTGTCCTAGACCAGTTTACAGTACATTAGTGACTGCTATAGGCACTCTTGGCTTACAATTTTGGAttggatttgttttattttccacaGAGGAAGTCACATTATtagttggtttttttttcttcctctgtaaatgtttagatttttttatttttattattaagacTATAATGTTATTGGTATTCACTATTGACGAtaagtgctgtagttttacatAGAAGAAGGAACACTTCTTTCATCGGGTgaaaatactaagctattatACAAATCATGCATTTACAGTGGCAGCCATTGTAGTAATAATCCTACATCATTCATTTCTCCAGCGGTGGTGCGGCCAACCGTTCCGTCTTTGGCATCAAACCAACCACAATTTTTCCCaaatattttctcttgtgtaGTTCAATGTACAGTAAAAACAGAAGGGAATTCTACAATGGCTCCATCTGTAAGTTCGTAGGTGTTGGGGGTTTATAGCTTTTCTGTAAATACCAGGGGACAGTATTTAATTTGGATACATTCAGCCAGACCAATGGTAAAAAAGCAACTATTGGTTGGGTCCCGCTCCCGACAAATCAGCCAGACCGTCGACTCGTCTGAGTGTCAAACTCCTTTCCAGACGCTGTGAAATGTGGCAGCTGGCTGCAGACAAATCCGAGCCAGGGAATGACAGTTTGGTCACGTCTTCCCCACAGTCATCACGTCTCTTCCCCCTCACTCAAAATGAGGGCTGAAAGCTTCATTTCAAAAGAAGGAACCCCAACGGGTGTAAAAAGCAATTAAACGGCATGCAGATGCAAGTTTTAGAATTTGAACCCAGTGCACCTTAAATTCCCTGCACTGGGCACTGGGTGTCGATCATCATTTGAGATAATtagaatgagtttttttttgcatagcaACTATAAGTAAATACATTTCTACCACCAAAACTTGAAATTTTGTGTAAAGTCAGACTCAGACTTTGTAAGACCTTAAAATGCTGCCGCCTGGAATTcaaaccaaaaaacaaaccACAATGGAGAGAGTAGTAAACTAAACTTCAGATCGAATATAAGCTGTGAAATTGGGCACCATATAATATAAGATGTATACGAAAATGACACTGGGAAGTAATGTCTGACACCCCTAAAACCTGTACTTACATACAACATATGTCGATGCATTTagagctcatttaaaatgtctttagaCGGCCATAATGTTGTCGATGTGAGCCTTTAACAACTGAAAGCAGACTGTCTAAGAAGTATGACGTTACAACTGTTGCATTCACTTTAATATGTCTGTGTAACGTGTATATGTATCACCAGTGTCCCGTTTCCTATAGCTGCATTAACCCAGTGTCGGGAAATTTAGACTTTTAACTGTGGTAGCAAACaaaatttatgtttttgtccagCTTGAAAGGCCATTAGATCAGTTCTTTGCCACACACAATGGAAAATCACAACTTAACTGCCTAGGTTTTCCACAATCGAAGGAAAACGTACGGAAAGGGTGAGTCAGAGTCAGTTTTTAATTGCACCTTatttgtataataatataactttATATCAAACTATGAggccaaaaagaaaagaaaacactgccATCTTTTAATTCAGGGCCCTCATTGGCCTCCAAACAAATCCGAATACTGTCAAAACCCTTAAGCTTTTAGCTTTAGGTGCTTCTGTTCGCCCCCAAAAGCAGACCTATTAAAATAGATCAAAATGTTCATAAACTATTCATTCATGTCAAGTACTCTATACACTTACACATGCATTGCAGGAATTTGACCAACGGGGCCTCATTTTACATCCTCTAAGATTCTGATTATTTCTTTTGTCAGTTTATTTGATTTCTTCAAATGGAATACAATAGTTCATATCATTAAAGGGGGATTTGTGAAACCAAATCCACAGCAGACATCTATTTTTCATACAGTGACAAACTTTTCCTATATGAGTCGTCTTTGTACAGCTAAGCTCCCATTGCAGACGTCCCGTTTTAATACACAAAGCTTCATTTTAATCTTAAAACTTTTGTACAGATCTGGTTCTCGATTCCCCTTAAGGATCTTTGcacttgtgtaaaaaaaaaaagaaaaaggaaataatGCTGAAAGGAAAGATCTGTCAGCATTTTCCAGTAAGAACAACCGCATCAGAAGCattaaataacataaaaaaaaaaaaatgattaatgGCATTTTGAAAATCTGAATTGCACAGAGCACCTATGGATAGTTAAATAAAATCCGGCTGATCTTGTTCGATACTCTCACAACTGAATAACATCTTTCCTGAGTGCTGAGATCTTTGGTGGGGGAAACATGGACCACAAATAATAACTAATGCAGTCATTTATTGGTTTATTCTGCCTTcgtgtgtgtatatttacacTATGTACCAGTCCCTCTGCCTTCTTACACTCCCCTTCAGTTAGCCTACGTAAACCTTCCCTTGATCTAAGctaacctttttttatttttttctccgaTAAAAATGAATTTGCAAGAGAATCGAAGCATTAGCGATGCACAAGTTTTTACCGCCgaatgtttaaaaatgtgaaaGTCACCTGCGGGGTGAATGTAAACGTTTCtgaagatttattttttagggTGAGGAAAAATTTGCTTTCTTGTATTTCTTTTAGTTATTGATCGTGTTTTCATTGACTTCAGCAGTTTCTTGTTTTGAGTTGATTTTtgattgtgtgtctgtcacGTTTGCCTTTTTGTATTCCAAATATAGTGTATTGTGAACCTCTGTCGTTGGAGTGACATGCACAACTAtcaatcaaaaagaaaaaaaaactagcaaaaaaaaaaaaaaaaagctacgaTTTGTTACGTGCAATACTTTGTagaatactttttatttttcttgctGTTTTTCCAAGAGGTGGTACTGACCTTTTGTAACACTTCAAGACGATAGCCTATGAATTCTTGATAAATGAAATTTTAATCTTTAAGGGTCCATTTCAATTTAAAACCCTGCCACAAAATGCTCTGCAGTGTGGAACTAAAAAGCAAACTAAACTTCTACTCCAACAAAGATCTTGTGGTTTGAAATGCACTGAGAAGGATACTAATCCGTTGTCACATCAAACTGAAGCAAaatgcaaaatatatttttttttattttgttgtgacACACTGCTGAAGTTGTGCGTTTGTGAGGGGTATGAAACACAGTAACACTGCCACTAAGCCCACCTTCCTCCTACCTGCCTATGTTTATCTCAGTACTGCCatgttgtcaaaaaaaaaaataataatcagggCAGCTTTCCAAAAGCACGCCGCCACCAAAGTTCACCATTTCTAATCTACTAACACATCAGCGATATTTGGTAAATCTAACCAGTCCCCTATAAGGCTTGTACATCTTATTTGCTCGCGATGGAGCAAATACCTTTTTCATTTCGGCTGCTTTTGGGAAGCCTGCCCCGCAGCAGCAAAAGCGGTACATATAAAAACCTTGATTACACCATATCAAATGTGGGCTTTTCTTTCAAAACCTTGTATGCAATTTCTACATTCTGCTTCTTCAGACATTTCTATCTAAATCCAACTCCACTTCGCCAAACCCTGCAACCTTTAGTGCTTTATCAAAGAAACGGAAGAACCAAACTACATCTACACAGGAACAGATAACCTGATTGGAAATCCCATGTCGCCTACAtcgtgtttgggtgtgtgtgtgcattcctGGTACGAAAACACCACCATATCTGCAGGATTCGGGATCAGATTTTCTGTTTCTGCGATACAGATGCAACATTAGACAATACAAATGTGATCTTCGGTCTATAGAGGTGACCCAAAACTGCGACTGCGTGGCTGCGAAGGAAGATAAATGGGGCTCCGTTTCCTTAATGCGAGGATCGTCTTGGTCCTTTGGTTGAAAGTTTGAAAAAGATGTCTCACTCAGAGAACCATATCTATGATGTAACCCAATTTACAGTTTTTGGCATTCATAGCTTTGATTAAAGATTTGACTTTTGGGGACGAGAGAATGAAACACAAAGCTGTAAAATCATCTTTCCTcctatttttaactgaaacaaTGGAGATCTCAGCGCTAAGTCCTCTGGGAAATGGAGTCCCACTCATCCTTCCCATCCTCTCTGTCGCAAGATTCATTCTGACAGGCTTCCCTGCATTATACTGTATGCCAGCCCTTCCTTTTTGAGAATGtacatgagaaaatgtttttttaattcttgatgaagaaaaaaacattttttaaagaatttgaaaggttttatttttatttctatggccAACCTGTAAGCTAggtagaaaaaataaataaatatgtgttTGAACAGGTTTTACGAAcgtgtaaaacattttttttatttcttaataaaaaatgtgtctTCAGAAAA

Function

symbol description
slc6a6 Enables alanine transmembrane transporter activity and taurine transmembrane transporter activity. Involved in alanine transport; amino acid import across plasma membrane; and taurine transport. Located in plasma membrane. Part of apical plasma membrane; basolateral plasma membrane; and microvillus membrane. Biomarker of multiple system atrophy.

NR:

description
PREDICTED: sodium- and chloride-dependent taurine transporter-like

GO:

id name namespace
GO:0015849 organic acid transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005369 taurine molecular_function

KEGG:

id description
K05039 SLC6A6, TAUT; solute carrier family 6 (neurotransmitter transporter, taurine) member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798972.1 True 8021 mRNA 0.42 15 30821681 30873506

Neighbor

gene id symbol gene type direction distance location
lsm3 lsm3,LOC100705055 coding upstream 136146 30679316 ~ 30685535 (+)
abraa LOC103364886,LOC100691009,LOC101485260 coding upstream 308193 30504694 ~ 30513488 (+)
tomm34 tomm34,LOC102784590 coding upstream 378682 30429007 ~ 30442999 (+)
LOC120557913 NA coding upstream 413836 30389010 ~ 30407845 (+)
LOC120557912 NA coding upstream 443785 30354966 ~ 30377896 (+)
zgc:171566 ggh,LOC108243634,LOC102781709,LOC100692082,LOC107384984 coding downstream 504474 31377980 ~ 31417492 (+)
rspo4 LOC103374720,LOC103367962 coding downstream 1507176 32380682 ~ 32444324 (+)
ripor3 LOC100693168,LOC104944097 coding downstream 1774093 32647599 ~ 32730753 (+)
psmf1 psmf1 coding downstream 1946464 32819970 ~ 32834491 (+)
cand2 LOC100694792,LOC102304752,LOC101484714,LOC108244949 coding downstream 2128597 33002103 ~ 33033297 (+)
G42870 NA non-coding upstream 11617 30809829 ~ 30810064 (+)
G42836 NA non-coding upstream 144664 30673827 ~ 30677017 (+)
G42797 NA non-coding upstream 229086 30591943 ~ 30592595 (+)
G42793 rims4 non-coding upstream 293335 30518262 ~ 30528346 (+)
G42792 NA non-coding upstream 329840 30491600 ~ 30491841 (+)
G42899 NA non-coding downstream 19394 30892900 ~ 30893662 (+)
G42918 NA non-coding downstream 72866 30946372 ~ 30953050 (+)
G42949 NA non-coding downstream 510879 31384385 ~ 31384694 (+)
G42951 NA non-coding downstream 528578 31402084 ~ 31402447 (+)
G42953 NA non-coding downstream 544920 31418426 ~ 31419591 (+)
ergic3 ergic3,LOC102788871 other upstream 685847 30109535 ~ 30135834 (+)
G42449 NA other upstream 1579428 29240413 ~ 29242253 (+)
ephb2b LOC104917933,LOC103376520 other upstream 2998421 27670963 ~ 27823260 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other upstream 4056944 26652851 ~ 26764737 (+)
G41850 rps10,LOC102793608 other upstream 4272882 26542507 ~ 26548799 (+)
G43045 NA other downstream 1586626 32460132 ~ 32460863 (+)
G43051 LOC102201960 other downstream 1597289 32470795 ~ 32471605 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other downstream 2164428 33037934 ~ 33041311 (+)
G43277 NA other downstream 2314232 33187738 ~ 33212318 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other downstream 2388689 33262195 ~ 33336767 (+)

Expression


Co-expression Network