XLOC_005105


Basic Information

Item Value
gene id XLOC_005105
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4190022 ~ 4194304 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010795
TTTCAGGACTCTTCTGTCCATTTCGGAATGGGTACAAAGTTAATATGTATTACGGATATTGGATCTCTTTGCCGACACCGTTTCCTTACTATGGGCTCAGACACAGACTTGTTAAAATCCACAAAAACGGATTTTTTACTTTCAACTTTCAACAAGAAGAGTCAACTCAAGCTATTCCAGCTTATGGGTTTACTGACACTGTTGCGCCGCTATGGACAGAAATTGACGAAAGCGACGTTTACATAAAACACTTCACTGGTGACCGAATTCTACAGCTAGTGACAAAGAATATTAATCAATATTTTCCTGCTTTCACTGCTGACGTTGTCTATTCTTGTACTTGGGATAATGTGAGATTTTCTAATACTTCTATCTCACAGGTAtgatttgtttcagtttttgtttCCAGTTGTCTTGTGACTCTTGCGTGATCATTTGcggttttgtttttcttcagagtTCCACTTTTCAAGTATTGCTGATCACCGGTTCTGGTTTATCattcattatatttaattatgcCAATATTCCCCAAATTAAACATATTGCACTGGTGAGACTTTTCAAATTTACAGGATTAGAGATACAGTGcgtctggaaagtattc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010795 True 607 lncRNA 0.37 2 4190022 4194304

Neighbor

gene id symbol gene type direction distance location
XLOC_005104 si:dkey-32n7.7 coding downstream 4468 4170921 ~ 4185554 (-)
XLOC_005103 NA coding downstream 20323 4143594 ~ 4169699 (-)
XLOC_005102 NA coding downstream 60202 4089737 ~ 4129820 (-)
XLOC_005101 aldoab coding downstream 119964 4052180 ~ 4070058 (-)
XLOC_005100 si:ch211-180a12.2 coding downstream 161943 3998764 ~ 4028079 (-)
XLOC_005106 si:dkey-32n7.8 coding upstream 2189 4196493 ~ 4199728 (-)
XLOC_005107 si:dkey-32n7.9 coding upstream 7522 4201826 ~ 4206869 (-)
XLOC_005108 vkorc1 coding upstream 22874 4217178 ~ 4220713 (-)
XLOC_005109 NA coding upstream 37553 4231857 ~ 4232505 (-)
XLOC_005110 zgc:92313 coding upstream 47154 4241458 ~ 4249000 (-)
XLOC_005094 NA non-coding downstream 324788 3860464 ~ 3865234 (-)
XLOC_005092 NA non-coding downstream 403640 3782621 ~ 3786382 (-)
XLOC_005087 NA non-coding downstream 619941 3569747 ~ 3570081 (-)
XLOC_005111 NA non-coding upstream 80606 4274910 ~ 4287034 (-)
XLOC_005112 CU571308.1 non-coding upstream 92062 4286366 ~ 4286480 (-)
XLOC_005126 NA non-coding upstream 482882 4677186 ~ 4683350 (-)
XLOC_005128 NA non-coding upstream 622985 4817289 ~ 4817860 (-)

Expression


Co-expression Network