rfesd (rfesd)


Basic Information

Item Value
gene id rfesd
gene name rfesd
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10421844 ~ 10424787 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799092.1
ataagaagaagaaatgtgTAGATAGGGCCAACTGAAGACAGCCTGTGTCTGAAGATAATAGAGATGGAGCCTCCTTACCATGCAAGCCGGGTGTCAGCAGTACAGTTGTTCAGCATGACGGAGGAGACCGCTGCTTAGTTTCAAGCATTTCACAGAGCCATGGAGAAGGAGCAGCCTGGAGGACTTCATTTTGTGGGGAAGAAGGATGAACTTATTGAAGCAAAGCGCTCTTTCAGAACACTAGAGGGTCGGGATATACTGATCATTTACCACCAGACCGTCTTCTATGCAATGGACTCTTACTGCTATCATGCTGGGGGAGCACTGGAGAATGGAGACATTGAGGAAATTGCCGACAAGCTGTGCATAATTTGTCCAAAACACAAGTACAAGATCTCTCTTGCCGACGGGGAGGGCATATATAAGGGCACCGACCCCAGGGAAAAGCCGCCTGTGCCCAGATGGTACTCCAAGGGTGTGAAGCAGCGGATCCACACGGTCACCGAGACCAATGGGGATGTCTATGTCAAGCTCTCTGAGGACACGTGTTGGATCGAGTCAGACTTCTACCAGGGAGAGAAGGGCAAGGTGGAAAGGGCCAAAGCTGCGGCAGCTGAGAAGAAACTTAGTAGTGTAAATGATTGATAAGGATGATTGCATCCCCTAtagtttttaaattttatttaattttatttttaatttatcttGAAGGAGTTTTCTATTGTCTCCCACGATCTCCTCTAAATGAATGCATGATGACTCTATAGAAATGATGTCAGTCTTTAAATGTCACATATTTCATGCTTTACCTCAAGTAACCATTAGGGCTTAAAAATGGGTCTGTTTACATTGTTTACAtgatattaaaatgttttagtcAAAAAAATCAAGTCACATATTGCCATGTTAGGTGAACATCTGGCATCTCAAAACAATCATGTAAATAAAGTTTTTATGGATACA
>XM_039799093.1
TGAATGTTATGGAGGTGTTGTGGACTTAATTTAAGATGACAACTGTGATGGGAGGTGCCAACTAAATAATCCCAGTGACTAAGCCAAACTTTTCATGTGTAGTTAAGACTTCAGTTGAATTTCTCACCCGGAAAAACAGAATATCGTTTTTTATTGCAGCATTTCACAGAGCCATGGAGAAGGAGCAGCCTGGAGGACTTCATTTTGTGGGGAAGAAGGATGAACTTATTGAAGCAAAGCGCTCTTTCAGAACACTAGAGGGTCGGGATATACTGATCATTTACCACCAGACCGTCTTCTATGCAATGGACTCTTACTGCTATCATGCTGGGGGAGCACTGGAGAATGGAGACATTGAGGAAATTGCCGACAAGCTGTGCATAATTTGTCCAAAACACAAGTACAAGATCTCTCTTGCCGACGGGGAGGGCATATATAAGGGCACCGACCCCAGGGAAAAGCCGCCTGTGCCCAGATGGTACTCCAAGGGTGTGAAGCAGCGGATCCACACGGTCACCGAGACCAATGGGGATGTCTATGTCAAGCTCTCTGAGGACACGTGTTGGATCGAGTCAGACTTCTACCAGGGAGAGAAGGGCAAGGTGGAAAGGGCCAAAGCTGCGGCAGCTGAGAAGAAACTTAGTAGTGTAAATGATTGATAAGGATGATTGCATCCCCTAtagtttttaaattttatttaattttatttttaatttatcttGAAGGAGTTTTCTATTGTCTCCCACGATCTCCTCTAAATGAATGCATGATGACTCTATAGAAATGATGTCAGTCTTTAAATGTCACATATTTCATGCTTTACCTCAAGTAACCATTAGGGCTTAAAAATGGGTCTGTTTACATTGTTTACAtgatattaaaatgttttagtcAAAAAAATCAAGTCACATATTGCCATGTTAGGTGAACATCTGGCATCTCAAAACAATCATGTAAATAAAGTTTTTATGGATACA

Function

symbol description
rfesd Predicted to enable 2 iron, 2 sulfur cluster binding activity and metal ion binding activity. Orthologous to human RFESD (Rieske Fe-S domain containing).

NR:

description
Rieske domain-containing protein-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799092.1 False 963 mRNA 0.43 4 10421844 10424787
XM_039799093.1 True 977 mRNA 0.41 4 10421844 10423913

Neighbor

gene id symbol gene type direction distance location
cast NA coding downstream 88461 10294535 ~ 10333383 (-)
wdr1 wdr1,LOC102791765 coding downstream 205712 10204986 ~ 10216132 (-)
slc2a9l2 slc2a9 coding downstream 220093 10101729 ~ 10201751 (-)
zbtb49 zbtb49 coding downstream 408125 10007330 ~ 10013719 (-)
LOC120558214 synpr,LOC104965753 coding downstream 426089 9967082 ~ 9995755 (-)
ube2r2 ube2r2 coding upstream 9413 10434200 ~ 10442069 (-)
nop56 nop56 coding upstream 66529 10491316 ~ 10497248 (-)
LOC120558246 NA coding upstream 67503 10492290 ~ 10492357 (-)
LOC120558250 NA coding upstream 69416 10494203 ~ 10494322 (-)
zgc:64106 LOC104941154,LOC108239814,LOC103386237,LOC103356394 coding upstream 76879 10501666 ~ 10520703 (-)
G37276 NA non-coding downstream 110690 10310109 ~ 10311154 (-)
G37245 NA non-coding downstream 119333 10293098 ~ 10302511 (-)
G37258 NA non-coding downstream 151433 10257259 ~ 10270411 (-)
G37260 ptpra non-coding downstream 169291 10252158 ~ 10252553 (-)
G37165 NA non-coding downstream 361437 10059804 ~ 10060407 (-)
G37305 dcaf12,LOC102784774 non-coding upstream 29174 10453961 ~ 10456420 (-)
G37321 NA non-coding upstream 64013 10488800 ~ 10490052 (-)
G37361 NA non-coding upstream 127506 10552293 ~ 10553381 (-)
G37364 NA non-coding upstream 235999 10660786 ~ 10661268 (-)
G37418 NA non-coding upstream 541770 10966557 ~ 10974888 (-)
rhobtb3 glrx,rhobtb3,LOC102786935 other downstream 1938 10387917 ~ 10419906 (-)
LOC120556768 LOC104965754,LOC103359409,LOC102210396,LOC101479743,LOC102082439,LOC102300053 other downstream 415671 9998996 ~ 10006173 (-)
G37045 lrig1 other downstream 1026274 9394739 ~ 9395570 (-)
LOC120558079 fam19a1,LOC101482978,LOC107385433,LOC108244096,LOC103386186,LOC106518519,LOC101163164,LOC102209545 other downstream 1388177 8906439 ~ 9033667 (-)
mustn1b mustn1,LOC107385427 other downstream 1799022 8619087 ~ 8622822 (-)
tpgs2 tpgs2 other upstream 107739 10532526 ~ 10536353 (-)
fam219aa fam219a,LOC101484940,LOC100701621 other upstream 507448 10932235 ~ 10943639 (-)
LOC120557925 tmem233 other upstream 558283 10983070 ~ 10988818 (-)
G37432 LOC106915059,LOC106958204,LOC102221633,LOC103464975,LOC100700174,LOC101482873,LOC102210230 other upstream 626512 11051299 ~ 11053085 (-)
LOC120557334 cytl1 other upstream 915971 11340758 ~ 11343153 (-)

Expression


Co-expression Network