slc32a1 (slc32a1,LOC102787607,LOC100693191)


Basic Information

Item Value
gene id slc32a1
gene name slc32a1,LOC102787607,LOC100693191
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23149075 ~ 23153670 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799096.1
AATCTCTCCCGTTTTCTCCTGGTGGGGCACTGGGAGGGCTGGAGACGTGCTTTGCATTGGCAGGCTGATGAGGACACGTGTCTCCTCCCTGCCTCCCCCCCGGGCTCCACGGTACCGCATTGGCATCAGTAAAGACACCTGAAAACCGACAACCAACTCCTGGAAACGCTGCCTGCCACCTTATAAcccaaaagaaaaagagattaTAGGCCCTACAGAAACCTGTGGCTCGCCTTTCTTCGTGCGTAAAGCTTTTGCGCACACCGCCGAACTGCCTCAGAGACTGCCTCAGCGACTGAATAGGTGCGCTACTCGTCAAGCATCAGAGCGCAGTGCCAAAATGCAGAAACGGAGCAGCGACGTCTGAAGGTGACATGAACCTGGGGATAACCAAGAGCAGCAGGCGTACCTTGAACAATAAGTGGAGATAGCAACTGAAACCCGTCGGTGTCTTGAAACAAAACTTGCGCTTTTCCTCGTGGTTTTATCTAATGCAGAAAATCGAGAGCTGTCATCCAAAGTAGACTGActgggggaggaaaaaaaaacactaattaaGCTGCAGACAGTTGCAATTTAGGAAAGGAGCGAAAAATGGCGACGTTAATCAGAAGCAAGCTTTCTAATAAACTGTCAAATGCAGCCACCACTGTCTCCAACAAATCCCAGGCGAAGGTGAGCGGGATGTTCGCCAGGATGGGGTTCCAGGCCGCCACCGACGAGGAGGGTCTGGGCTTCGCCGCCTGTGATGACCTGGACTACGACCACCGGCAAGGCATGCAGATGGACATTTTGACAACCGATGAGATGGGAGGAGAGGGGAGCGGAGAAGCGCTGGATGGGGACAGCCACTACCAGAGGGACGGCACCGGTCCACCAAACTCAGCCTCAAAAGACGGAGATCTGGTGAACGAGTTGACTGAAGCCAAACCAAAAATCACCGCTTGGGAGGCGGGCTGGAACGTCACGAATGCAATCCAGGGGATGTTCGTTCTTGGGTTGCCCTACGCCATCCTGCACGGAGGATACCTCGGACTCTTTCTCATTATTTTCGCCGCCGTAGTGTGCTGTTACACGGGGAAAATCCTAATTGCCTGCCTGTATGAGGAGGACGAAGACGGGCAGCTCGTCCGTGTGAGGGACTCCTATGTGGACATTGCCAACGCCTGCTGCGCGCCCAGATTCCCATCATTAGGTGGCCATGTCGTGAATGTAGCCCAAATCATAGAGCTAGTGATGACTTGCATCCTGTATGTGGTGGTCAGTGGCAATCTCATGTACAACAGCTTCCCCAACATGCCTATTTCCCAGAAGTCTTGGGCCATCATCGCCACCATCGCTCTCCTCCCCTGCGCCTTCCTCAGGAGCCTGAAAGCCGTCTCCAAGTTCAGCTTGCTGTGCACGATAGCCCACTTTGTCATCAACGTCCTGGTGATAGCCTACTGCCTCTCCAGAGCGAGGGACTGGGCCTGGGACAAGGTCAAGTTTTACATCGATGTCAAGAAGTTCCCTATCTCCATTGGGATTATCGTGTTCAGCTACACCTCGCAGATCTTCCTGCCGTCTCTGGAGGGGAACATGCAGAAACCGAGCGAGTTCCACTGCATGATGAACTGGACTCACATCGCTGCCTGCATCCTCAAGGGCCTGTTCGCCCTAGTGGCCTACTTGACCTGGGCTGATGCAACCAAGGAGGTCATCACGGACAACCTGCCCCCAACCATCAGAGCTGTCGTCAACATCTTTCTAGTGGCCAAAGCTTTGCTGTCGTATCCGCTGCCGTTTTTCGCTGCTGTCGAGGTATTAGAGAAATCGTTTTTCCAGGACGGAGGACGTGCGATCTTTCCAGATTGCTACAGAGGCGATGGACGCATTAAACCCTGGGGGCTCAGTCTCCGATGTATCCTTGTTGTGTTCACCTTGCTCATGGCGGTCTTTGTGCCACATTTCGCCCTCCTTATGGGTCTCACTGGCAGCCTGACAGGTGCAGGCCTGTGCTTTCTGCTTCCCAGTCTCTTCCACCTGAGGCTTTTATGGAGAAAGCTGCTATGGCACCAGGTTTTCTTTGATGTCGCCATCTTTGTAATAGGAGGTATATGCAGCATATCTGGGTTTATCCACTCGATGGAAGGGCTCGTAGAGGCCTTCAGATATAACATACAAGAGTAAATGCAAGCCATTGCTGGAACTAGATGTTAACTGCAAACCCCACCATTTAGTGAACAATTTAAACACGACTTGCCGGCAAGCGCAGCTCTCTGCTTTATTCATGCGTAAAAAGCGCGCACACAACACACGCGGACATTTTCGCACTCATACAGTCTTGCATCAAGTCAGAAAAAAATGCGCGCATACACAGAAATAGATCCTGTGGTAGTGAAGGAATCAACAACACACTATATGGACAATAcatgttgtaaaaaaaagaatatgcgAACAAAcgtacatatacatattttcCAGTGGAGTGAACGTTTACAATATTGACCTTAAACAAAATTGCAAAAagggcagttttttttttctcccgtcGCTCTTGTGGTGCTTCCCCACATGAGTCTTCACTTCATGTAACGCTATACGAGTTTGTGACGGACGGACTTTCCACAGCATAATGTGATTTAAGATGagttttaaaatacaagaaaaaaatagaaatgctACTTTCTTCTATAGGTAATTTTCAATATGATTATGGGCAGTGAATGTGGTGTTAAGTCCAGAAAATGCCTGTGGACACACAAGACGGAAAAATAACACAATGGCAATAACCAGCAGTAGAAACACATATGAGTGCATATAGAATATGTAAAAGAATAGCGAAGTTTCGTTAGAAATGAGGAAATTGGACCTTACCCGAGCAGTTTAAAATACTGGAAATGCAAAATATCAAAGTACACATCAGCTATAAAAACTATGCATTGAATGTATGATCGGCCTatttcagacacacaaaacataatgAAACTGGGATATGGAAATTAAAAATTCCTTCAAATTTAGATTATCCTGCGTGAAAGTATTAATGCTTTGATATTTTTCTCTCCCATATTTTATTGAGCTTTTAAATAACAACATTCACCTGACCTGAGATACACATTCAAAGCCCACACCCTGGCCCAAATTTCAGCTAGATGGGGACCCCATATTGAAACCCTACACACTCAATTTGCcataatgcttttttttcccccattacATTTGACAACACACGAAAATTCGGTGTCTGAaaatctaaaaaagaaaaagattgaaGAGGAAAATGTGCATACAGACATTTTTCATTCCGTGCAATCCAATGGGTCCTGTGGAAATGTTATAAAACCGTATGTGTAGTGTGTTATTGTGGTTACATAAAGATGGAATGTATATCTCAAAGTCGTTATCATATATCgtgaaattaatattaaagaataaagaaataaGTGAAATTAtattgtaaaaa

Function

symbol description
slc32a1 Predicted to enable gamma-aminobutyric acid:proton symporter activity. Predicted to be involved in neurotransmitter loading into synaptic vesicle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite terminus; neuron projection terminus; and plasma membrane. Predicted to be integral component of synaptic vesicle membrane. Is expressed in dorsal habenular nucleus; inhibitory interneuron; and spinal cord. Orthologous to human SLC32A1 (solute carrier family 32 member 1).

NR:

description
vesicular inhibitory amino acid transporter

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15015 SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799096.1 True 3445 mRNA 0.47 2 23149075 23153670

Neighbor

gene id symbol gene type direction distance location
LOC120556778 arhgap40 coding upstream 22423 23106818 ~ 23126652 (+)
shmt2 LOC103359782,LOC102307393 coding upstream 213508 22909436 ~ 22935567 (+)
LOC120556810 nxph4,LOC103359783 coding upstream 242888 22860054 ~ 22906187 (+)
LOC120557968 stac3 coding upstream 379043 22761471 ~ 22770032 (+)
LOC120557262 r3hdm2 coding upstream 395562 22676522 ~ 22753513 (+)
LOC120557748 LOC103355891,LOC100710082 coding downstream 28779 23182449 ~ 23213859 (+)
ipo9 ipo9 coding downstream 80657 23234327 ~ 23254218 (+)
shisa4 shisa4,LOC102788956 coding downstream 102848 23256518 ~ 23265863 (+)
lmod1b lmod1 coding downstream 113179 23266849 ~ 23271555 (+)
timm17a timm17a,LOC102789540 coding downstream 120759 23274429 ~ 23280729 (+)
G41099 ppp1r16b non-coding upstream 130810 23011482 ~ 23018265 (+)
G41092 LOC104950336 non-coding upstream 184943 22958128 ~ 22964132 (+)
LOC120556826 NA non-coding upstream 324919 22776241 ~ 22824156 (+)
G41041 gli1 non-coding upstream 552560 22595427 ~ 22596515 (+)
G41040 NA non-coding upstream 555992 22591672 ~ 22593083 (+)
G41112 NA non-coding downstream 5616 23159286 ~ 23161818 (+)
G41114 LOC104933616,LOC107385352,LOC103355892,LOC103464385 non-coding downstream 9859 23163529 ~ 23172306 (+)
G41118 NA non-coding downstream 60488 23214158 ~ 23215795 (+)
LOC120557222 NA non-coding downstream 78502 23232172 ~ 23232958 (+)
G41126 NA non-coding downstream 101272 23254942 ~ 23255527 (+)
itga7 itga7 other upstream 1156464 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 1805364 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 3000385 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 3225526 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 3289734 19851548 ~ 19859341 (+)
cbfa2t2 cbfa2t2 other downstream 581278 23734948 ~ 23771932 (+)
znfx1 NA other downstream 694377 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 1401855 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 2054486 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 2528737 25682407 ~ 25690935 (+)

Expression


Co-expression Network