c4h1orf50 (LOC103374819,LOC106909683,LOC106955718)


Basic Information

Item Value
gene id c4h1orf50
gene name LOC103374819,LOC106909683,LOC106955718
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 3759494 ~ 3766040 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799099.1
AAAATGGGGCGGATCTTCAGGACCCTGTGAAGCCTCCGGCCGGTATATTTTGGTCAATTATTTAGCTGGTTACAAAAGCTGCAGGTGGTCAGAGAGAGGTTATATATTTGATAAAGTCACTCCCGAGAGGATTTAGTAGTAAAAAGTGAAAGAAGACAACATGGACAGGACGGTCAGCCTTCCCAGTCAGCCCGACAAAACCACCACAGTGACTCTGGTTGAGAGCAGCAGCACCCCCAGCGGGCTGGAACTGGTCAGTTCCTACCAGACCAACAGAGTGGGAGACCCCATGGACCTAGTGGCCCTGGCATCTCAAGTGCAGAAGGGAGATGACTTCATTAAAGCCAACGCTTGCAACAAACTGACAGTCATTGCCGACCAGATCAGATACCTACAGGAACAGGCCAAAAAGGTTTTAGAAGATGCTAAACGAGATGCTGACCTCCACCATGCTGCCTGCAACATTGTGAAAAAACCAGGCAACATGTACTACCTCTACCAGCGGCCATCTGCACAGAAATACTTCTCCATCATCTCTCCTAAGGAATGGGGTCCCAGTTGCCCTCATACCTTTGTCGGTGCATTCAAACTCCAACACGACATGTCCTGGACTCCTGTAGACGAGGTGGAGAAGAAGGACGCAGAGATGGCCATCATGGACAAACTTCTGAGCCAGCAGACCGCCTTACCACCTTACACAGAACCCAACTTCAAGGGCCTCTCTGATTAACCGACTGCTGGACTGGACATATGATGGATGCTAACTGTAGTCTTAATGGACATTTGGACAGAAAACAATCCGTACACGGATTGGAATCGCTGATATCAAAGCAGCCGTCACACAGTGTTAGGGTTTGATACACTGACCTGAGCGCACAATGCATTACTACTTACTACCAGCATTGGTTATACACTGTTGCTGATGTTGAATGTATacagctgtaaaaaaaagaaaaagaaaaaaaaaggtctccACTTCTTCCCACTGTACAAAACTGAAGCCAAAATATACCAGATACAGGCGCcaccatcttgtaattttggtgGAAGAGTCTGCGCAGTAGCGATCGGGCGTTGGAGCCGCGGTATCGAATTCCCGCCCATACACCCGCCCGGCCAATCGTGAGTCAATCATGATGTATCACTCCGCTTTTATAGCGTCAAATAACCAATAAAAACTTCACTTATCAGAAACAACTTACACTTGAACATACATCAGCATGAGCAGAACAACCTTAAATGAAAGAAATCTttgggaaaaatgtatttgatgtgcacttttaaaaaaaaaaaagttgggttCATGTCCCATCCACTAACATGGAGGGGGGCGGGGTTAATGACTGTTCCATCCAAACTGCTGTTTTAGTATTTCTGTCTTTCGTGTGTTAACCATGAAAGCTGAGTGACCTTGTAAAGAGCACAGGATGTATCCTGAGGGCAGAGCGTGTAACCAGGAGGGGTGTGCATGAGCCGAATAACTAACTTGACTCCCAACTCCTTTTAAAAAAGACTGTTGTGAACAATCTTCAGTCACTTTCTGTACTCTGCTGTGAGTGCTGTAAACAGACTCCTTACTTGCAAGTAAAAACGAACTTCAGTGA

Function

NR:

description
PREDICTED: uncharacterized protein C1orf50 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799099.1 True 1604 mRNA 0.46 5 3759494 3766040

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_3 NA coding upstream 473593 3285830 ~ 3285901 (+)
trnae-cuc_2 NA coding upstream 476492 3282931 ~ 3283002 (+)
mtss1 LOC102789651,LOC101478388 coding upstream 686224 2964127 ~ 3073270 (+)
osgn1 LOC102208111,LOC100711663,LOC103370650,LOC101475239 coding upstream 809927 2916796 ~ 2949567 (+)
ccdc51 NA coding upstream 876731 2863536 ~ 2882763 (+)
nuf2 nuf2 coding downstream 41132 3807172 ~ 3830945 (+)
cfap92 NA coding downstream 128265 3894305 ~ 3913220 (+)
hdac11 hdac11 coding downstream 449484 4215524 ~ 4242500 (+)
fbln2 NA coding downstream 506902 4272942 ~ 4361643 (+)
elf3 elf3 coding downstream 611278 4377318 ~ 4386408 (+)
G35718 NA non-coding upstream 81741 3670690 ~ 3677753 (+)
G35704 NA non-coding upstream 118087 3640919 ~ 3641407 (+)
G35627 NA non-coding upstream 485948 3273147 ~ 3273546 (+)
G35585 NA non-coding upstream 535332 3223739 ~ 3224162 (+)
G35589 NA non-coding upstream 681090 3020476 ~ 3078404 (+)
G35736 NA non-coding downstream 1336 3767376 ~ 3767576 (+)
G35737 NA non-coding downstream 1812 3767852 ~ 3768388 (+)
G35739 NA non-coding downstream 6571 3772611 ~ 3829941 (+)
G35741 NA non-coding downstream 23964 3790004 ~ 3791973 (+)
G35833 NA non-coding downstream 602651 4368691 ~ 4369050 (+)
epha8 epha8,LOC102791453 other upstream 169882 3453600 ~ 3589612 (+)
G35618 NA other upstream 400674 3244231 ~ 3358820 (+)
G35578 NA other upstream 742369 2930924 ~ 3017125 (+)
G35534 NA other upstream 1011722 2747220 ~ 2747772 (+)
G35364 NA other upstream 1171332 2583514 ~ 2588162 (+)
G35791 LOC101072424,LOC104921976 other downstream 182794 3948834 ~ 3950128 (+)
G35921 NA other downstream 721495 4487535 ~ 4585475 (+)
LOC120557928 NA other downstream 763793 4529833 ~ 4532862 (+)
cdk5rap1 cdk5rap1 other downstream 1145659 4911699 ~ 4934164 (+)
G36156 LOC103374102 other downstream 2154884 5920924 ~ 5924400 (+)

Expression


Co-expression Network