snai1a (LOC104939346,LOC103358824,LOC108244374,LOC107385873)


Basic Information

Item Value
gene id snai1a
gene name LOC104939346,LOC103358824,LOC108244374,LOC107385873
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7412789 ~ 7416280 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799119.1
AGAGGCCAGTATTTAGTCATTCCGCATGAAAGCCATACACACACTTTCCTGCTCAAGTCCACTCTAACTTGTGGACTATAGGAAGATATTTCTCTGTTTCCTGCGTATCCGAGGACCACGATTTGTTTTACCCTTTTTTATTCTTGTAGACACTGTGCGTCGTGACCACAGGATACTTTTAcgcacaattatttaacactcaCAAGGACAATGCCTCGATCTTTCTTGGTCAAAAATTACTTCGCGAAACAAAAGCCAAACTACAGTGAACTGGAATGTCAGAATGACACTTCACTGGAGAGGTATCATTTTGCTGAGCTCTCATCAGGGGACAACACCTCTACAGCCACCTGCTTCACAACAGGTCTGGTGTGGGACCTAAGTGTCCTGCCCGCCCTGTACCTGCCCACCTCCCAAACAGAGCCCTCTGCCACCCCAGGCCCCCTAGACCTCAGCTCCCCTTCCAGCCTGAGCAGCGGCGCCAGCAGTTGtggagaggaggatgaaggaCGCACCTCAGATCCCCCCAGCCCCGAACCTGTACACACATATGCCCCTCGCCAGCGGATGAAATGCACCGGCGTTATGCCTATCAGTCcccctgaggaggaggaggaaacagaGGCCCCCGTCACAGCAGCAAGGCCAGCCTTTCTCTGCAAACACTGCCCCAAAGAGTACACCAGCCTCGGGGCTCTGAAGATGCACATCCGCTCACACACGCTGCCCTGTGTGTGTACCACCTGTGGAAAGGCTTTCTCCAGGCCGTGGCTGCTGCGCGGCCACatccgcacacacacagGTGAGCGCCCTTTCTCCTGCCCCCACTGCAACCGGGCCTTCGCTGACCGCTCCAACCTGCGGGCTCATCTGCAGACCCATGCTGAGGTGAAGAAGTACCAGTGTGGCGTCTGCTCTCGCACCTTCAGCCGCATGTCGCTGCTGCAGAAACACAGCTCCTCCGGGTGCAGCTCCTCCATGGTGTGAGAcaccacagagagagacagagggtaCCCAGTTAGAGCTCAGGGCAGTGGAGGGCTATTGGCCACGGAGAGGGGGTCTACACAAGCCCAGCTGGCCTGTTGATGACACGTAAGGCCACAAAGAACATGAAGTGGATTTCTTTAAGAGACCTGGAGGGAATAAATCCTAATTCTGGATTTGACTTTACAAGCCGTTTAGCTTCTCTGCTCtgtgaaaaaaatacatctgaGGAGCAGATTTTTTCATCCAATCTAGATTGAGGTCTTGAGGCTGGACCAAATCTGAACTGAGCAATGCTGACACTCACTTGATATCAGCCCATTTGTTGCTATTGTGCCCATTCCAAAGACCAAATATGTAGTTAACTCATTGGGGTAAGAGGTGTTCTTTCCTGTCTCTGTCCTGGTGCTGGCCAGCTCAGGATCATAGCCTAGACACAGCTGCCGAGAGGTAGGGGTGCGTGGGTGGAATAAATCTCTCAGCGtgcctcaaaacacacacacacacacacacacagacacacacacacacaaagcaaatGCACACACAGCTGTCCCTGGTACTGTGGTGTAGATAGACGAGGTGCTAACAGGTGCTACAGCCATGACCTTCGCTGGCTGATAGCAGGTGACTTCTACTGCCCTTGGTTTGCTTAAGAAAAAAGAGGAAGCATGTCATCGCCACAAATTTGGCATCATTAAGTCTTTTTTCAGCAGTGAGGATCATTTTAAGCCTCTATTTTGTCTACATCCAAACCTTCTCGCTAATCTGATGATTTTCAGAGATAGGAAAAGCCATGCTGTCATTTTCCAAAGAAGCTTCACTTTGCAGCACTGCTGCAATATGGATGACACTGCAAGCTATGCACTCAAGGTTAACACAGTGTTAATAATATCAGCCAAAGCCATATTTTGTAACTTAAATGAATTTGTGCCTTGAAATTGTATGccttttgaaacaaaaatgtgCCTTTTTTACCTCAGTTAGTATTTGTCGATTTAAAATTAACATTGATTGCAGTATTAGTAGAAGTTAGAGCCAACAGTTTGAAATGCAAGAAGGCTGGGACCAAAGATTTTTAAGGTTTACACCATGAAGACATGGTTGGCTTATATGTCATCAGAACTCTGTCAATGGACAGTAAAAAGATGAATTTTTTCCCAAACATTTTATGGCAGTGTTTTATAGTGCAATGTGCAGATGATGCGTTATTTCAATTTTGTACCATGCTTGTGTGTTCACTTCCATTTCTTGTATGTTGTAACTGATAAATTTCCATTCAATAAAGTAATTTATGTTTATTAAAA

Function

NR:

description
PREDICTED: protein snail homolog Sna

GO:

id name namespace
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0051059 NF-kappaB binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799119.1 True 2294 mRNA 0.47 3 7412789 7416280

Neighbor

gene id symbol gene type direction distance location
si:ch211-232b12.5 LOC104939380,LOC103365892,LOC100697406,LOC102796719 coding upstream 35139 7361940 ~ 7377650 (+)
mafbb mafb,LOC104945735 coding upstream 75477 7335466 ~ 7337312 (+)
gata1a LOC100696076,LOC102798593,LOC101485806,LOC102310803 coding upstream 95707 7312734 ~ 7317082 (+)
LOC120557474 traip coding upstream 322037 7082265 ~ 7090752 (+)
sema3fb LOC103371090,LOC104933620 coding upstream 471177 6882145 ~ 6941612 (+)
myh7ba LOC103358826,LOC104966023,LOC101480568,LOC102289245 coding downstream 17930 7434210 ~ 7449018 (+)
zmynd8 LOC103358838 coding downstream 293686 7709966 ~ 7727318 (+)
LOC120557338 NA coding downstream 311869 7728149 ~ 7751120 (+)
LOC120557341 LOC106565946 coding downstream 346608 7762888 ~ 7769742 (+)
cdh4 LOC102194679,LOC102298797,LOC100702438 coding downstream 469472 7885752 ~ 8116031 (+)
G36485 NA non-coding upstream 53057 7357751 ~ 7359732 (+)
LOC120557355 NA non-coding upstream 82161 7329295 ~ 7330628 (+)
G36470 NA non-coding upstream 138910 7273081 ~ 7273879 (+)
G36469 NA non-coding upstream 139989 7272454 ~ 7272800 (+)
LOC120557300 NA non-coding upstream 154712 7242362 ~ 7258077 (+)
G36563 ndrg3 non-coding downstream 59854 7476134 ~ 7479379 (+)
G36568 ndrg3,LOC105922538 non-coding downstream 71616 7487896 ~ 7518266 (+)
G36604 NA non-coding downstream 104900 7521180 ~ 7525963 (+)
G36609 NA non-coding downstream 115437 7531717 ~ 7532203 (+)
G36616 LOC103386327,LOC105417874 non-coding downstream 127706 7543986 ~ 7547035 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 106446 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 140421 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 225575 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 774266 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 1106646 6139463 ~ 6306143 (+)
G36744 NA other downstream 811482 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 2343953 9760233 ~ 9856656 (+)
G37197 NA other downstream 2888907 10305187 ~ 10309996 (+)
glrx glrx other downstream 2971628 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 3580950 10997230 ~ 11012909 (+)

Expression


Co-expression Network