rdh5 (rdh5,LOC104964277)


Basic Information

Item Value
gene id rdh5
gene name rdh5,LOC104964277
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24561705 ~ 24567422 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799125.1
TAAACCAAAAGGGATAAAGCCTCTCTGTGACCAGCCTCTCTGAGTTAAACAGAAGAATAACCTAGAAGGAGAAGAAGGGGAAAGAGGACGGATAACTTGTGGAGATCCATCACTTGTTACAAAGAGGAAAAAGCGCTAAATCCTCCAGTTGACCAAAAACCCCACTTCTAATCCTGGAAGCAGCATGGATATGCAGTTTGTCTACGACCTTTTAGGGGAAAATGCTTGGTCATACATTAGTACTACCTTTGTCGTGTTGTGGATTATCGTGTGGCTGTACAGAGACAGCCTGCAGATTGAGGACATCTCTAACAAGTATGTCTTTGTGACCGGCTGCGACTCGGGCTTTGGAAACCTGCTATGTAAGAAGCTCGACCGTAGGGGTTTCCGCGTGCTGGCTGGCTGTCTAACAGAAAAGGGAGCTGATGACCTGAAAAGAGTGGCGGGGCCTTATTTAAAGACTGTCCTGCTGGATGTGACCAATCAGGACAGCATCCAGAAAGCCATGGAGTGGACCAAGACTGAGGTTGCCGATAAGGgACTTTGGGGTATTGTGAACAATGCTGGATGCTCATTACCCATGGGTCCTTCAGAGTGGATGAGAGTGGAGGATTTCCATAGGACACTGAAAGTCAACATGAATGGAGTGATTGCCATGACGATGACCTTCCTGCCCCTCATCAAAAAGGCTCGCGGCCGTATTGTGAATGTGGCATCAGTGCTGGGCAGGGTAGCTGCAAACGGTGGTGGATACTGCATCTCCAAGTTTGCAGTGGAGTCTTTCTCTGACTGCCTCAGGAGAGATATCAACTACTTTGGAATCAATGTGTGCATCATTGAGCCAGGCTTTTTCAAGACCGCAGTGACAAGCCTGGAACCCCTCGAGAAGGAGCTGCATcgcctgtggaaccagctcagCCCTGAAGTACAAGCCAGCTATGGAGACAAGTACCTTGATAAATACATCAAGGTCCAGCGTTTGATCATGAATGCTATCTGCGACACCGACCTCACCAAAGTGACCAGCTGCATGGAGCACGCTCTGACTGCTGCCCACCCACGCACCAGATACAGCCCCGGCTGGGATGCCAAGCTTCTCTGGATCCCCCTCTCTTATATGCCTTCCTGTGTAGTTGACATTGGGCTGAAGCTGGTGCTGCCTCGTCCTTCAAAGAGCGTGTAACTCATAATGACttaaaaaatgtcttttaaagtcctcagccattttgtttaattttgatGCAGTGCAGAGGTTGACTTAAATAAACTATCTTTTGCCTTTCAAAACACCCATATTCCATATCTACATTGGCCATGCAATGATCTGATGTTGCTGTTATTATACTTATATGTGCATAATCTGCCATGTAAAAGTATTTAGGCAATAtgaaagaaaataatgaaaCTGTATTGTATAATgtactgtttattttttgttttgttgttaacatTGCCCTGTGCCTTTTAACACTGTTATTTATGTTGCTTGATATGGATGATGTTAACTATCAGAGGCTAAATAAACAGGGTTTTCCTATGAAGAAACTCTTAGAATGCAATGCAGCATATCATGGACACAAAtcaaataaatagctaaaagcTTTACCATGgaaaaattacacacacacaactatgtGCAGACCCATCATGATGGTTTCTGAATTGTTTTGTTTGATGTGAACAACGATGCATACATGAAAACCTTTACATGTTGGTGATTTTGGTGAGTTTTGAGTTTTAGTTGAAGTGTTGCTCCATTATGGGGCGAGACCGCTCAGTtacgttgtaaccttggttctctgaccAGTACATATGGAATATGTAACAGTGGAGAGATAGTCTCGATACGATAGAGAAACACTCTATGACCCTGGGGCTTGGGAAAAGTGGGGAATGAACATTGTAGATTTTACAttctgtgtgtgagtttgtcaGATGAGGATCTGCTGTCTGTTAACTGAGAGGTAACATGAGAGGGCCATAGTCCTAAGGGATGGCTAAGGGTTTAACATCAAAAGGCTTTTGTCTTGTAGAAAGGTACATTAACATGACCTATGGTCTCAGGAAGGGCTCAATGTCCTTAATGCCTGATTGAATCAGCTTTAAATGAGATTAGCAATTGTTTCTTTGTTGTACTTGCTGGCCTTTAAGGCAAGACACTCTGAAAGTCAGGACATAACATCTGTCCAGATCTTCTCTCCATGACTCATGAAGCAAAGAACCCTGATTCATCACACCATCGACCCTGCAATCTCTTCTGAAGAAATTCTTCTACAGAAACCTTTTGATAAATTCAAAATCTGAAATTGGTTGATAATCAGGAGAATTTTAATTCAGCAGCAACATTGTGGTTTAGTAGTGGCATGCCGCATGACATTATTGATGTTAGACATTTAATTGTTATTTTCGTACAGAGACTCACGCTGAAAGTCAGAAACACTAGAACAAACAAAGCTCCAACAGCATTCGGATTCGGTCCCTCTGCTTATAATTAGCATCAGTTTATGTTCTGCAACATTGACTTTTTATCGGGTGGTTCTGAAAATTCACATAAGCTTGTGTAAAACCAAACAAGAAATGATTTTATTGTCACTATTATGCGTTATTCTCTAAATAGTATACTATTTCATttgcctagaaatctagacgcaccctagtggcagggtctggcttgtcaggctactatTTCAGTGTTTGTCTATGAAAACCCAAGTGAAAAAGTGTGTGCTGTGTATAAATATCACATAGTTGAAAAATCTCTCAAGTGCTGAAGgtgttggttcactgaacatctGATGTGGTgggcacatttaaacacaggatCCAGTGTCGTTCCAAGGTTTTATTGTTGTCAGTGCAGGGAAAAGGTTTACACTGGTTGCAGGTGAATAATggatggtggatggatggatatatggATGTATGGATGATTTTGTATCAGTAATGCATCCACAGTCTGCATTGCATCTACAGTCTGTACTTGGGTACAACAATAATATTCATCTCAAACTCATATTGTATACACATTTAAGTCACCTGAGTAATATCTAAATTGTTCTGGTTAAAACactatttttgtagttttaataTATTTAGTATTTTATGTGTGTAAGATGTTGAAAATAACCTGTTTCACATACTTTTAAGTCCACTCACATTTAATAATTGTTGCTGCACACAGTTAATTTAAGCCATCAGTTCAGTTAGTTATCAGTTACCATTGACAGAATGTACTGAACAGGTTCAGCAGGTGGTGATCATTATAATAAACTGAGAAGCTTGTTGACTGaccaagtggtgttaca

Function

symbol description
rdh5 Predicted to enable oxidoreductase activity. Acts upstream of or within eye photoreceptor cell differentiation; retina development in camera-type eye; and vitamin A biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gut; heart; pineal complex; skeletal muscle cell; and visual system. Human ortholog(s) of this gene implicated in fundus albipunctatus and night blindness. Orthologous to human RDH5 (retinol dehydrogenase 5).

NR:

description
PREDICTED: 11-cis retinol dehydrogenase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00061 RDH5; 11-cis-retinol dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799125.1 True 3305 mRNA 0.41 6 24561705 24567422

Neighbor

gene id symbol gene type direction distance location
eya2 eya2,LOC103355465,LOC102207428 coding upstream 40397 24490859 ~ 24521308 (+)
gcnt7 gcnt7,LOC102795321,LOC102207891 coding upstream 112336 24441312 ~ 24449369 (+)
LOC120558070 cdh22 coding upstream 395886 23972393 ~ 24165819 (+)
rbck1 rbck1 coding upstream 725737 23825726 ~ 23835968 (+)
tox2 tox2,LOC104948894,LOC108231505 coding upstream 896092 23571602 ~ 23665613 (+)
gls2b LOC103355460,LOC104964278 coding downstream 1069 24568491 ~ 24583147 (+)
asic1b asic1,LOC104953473,LOC102798299 coding downstream 56070 24623492 ~ 24822313 (+)
smarcd1 smarcd1 coding downstream 260384 24827806 ~ 24858457 (+)
LOC120557580 gpd1,LOC102799081 coding downstream 291839 24859261 ~ 24864094 (+)
cers5 cers5 coding downstream 298752 24866174 ~ 24886029 (+)
G41375 itch,LOC104964281,LOC107681287,LOC101070007,LOC108231686,LOC103355463 non-coding upstream 19552 24540909 ~ 24542153 (+)
G41368 NA non-coding upstream 38098 24521599 ~ 24523607 (+)
LOC120557758 NA non-coding upstream 107686 24452621 ~ 24454019 (+)
G41360 NA non-coding upstream 110136 24436382 ~ 24451569 (+)
G41354 NA non-coding upstream 139822 24419201 ~ 24421883 (+)
G41441 NA non-coding downstream 354214 24921636 ~ 24921851 (+)
G41518 NA non-coding downstream 455036 25022458 ~ 25022749 (+)
LOC120557911 NA non-coding downstream 485414 25052836 ~ 25065136 (+)
G41539 NA non-coding downstream 517992 25085414 ~ 25085842 (+)
LOC120558031 NA non-coding downstream 531865 25099287 ~ 25113176 (+)
bloc1s1 bloc1s1,LOC102796612 other upstream 1387 24555525 ~ 24560318 (+)
znfx1 NA other upstream 694193 23848047 ~ 23867512 (+)
cbfa2t2 cbfa2t2 other upstream 789773 23734948 ~ 23771932 (+)
itga7 itga7 other upstream 2569094 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 3217994 21295102 ~ 21343711 (+)
slc12a5a LOC103355988 other downstream 640734 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 1114985 25682407 ~ 25690935 (+)
LOC120558082 kcna10,LOC104941363 other downstream 1199670 25767092 ~ 25872919 (+)
LOC120558088 LOC104941431 other downstream 1337347 25904769 ~ 25907738 (+)
G41825 NA other downstream 1701180 26268602 ~ 26273315 (+)

Expression


Co-expression Network