prph (prph,LOC103375502)


Basic Information

Item Value
gene id prph
gene name prph,LOC103375502
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14631878 ~ 14637440 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799140.1
GCCTGTGTGTATAAAAACCCACAGCACTCTTCAGTCTGATGTACTGTTGCATCACGAGCATCTCCAAGCCTCCAGCTCTCTCTTCTCAGAACAGAACGAGACCAACCATGAGCCACTCTTCAATGCATACCTCAACTTCCTACAGGCGCACCTTTGGAAGCCCACACCCCATCTCCATGTCCTCTTACTCCCCTGTATCCTCCCGCATGCCCATTTCTGGGGGTCGCTATATGCGTTCAATGTCACCCGTGGTTGCATCCCGCTCCACCACCTACCAACAACAGCGTTCTCGCTCCAGCGCCCAACCCCCTCGCCTCTCCTATGACAAGGTGGACTTCACCCTGTCTGAAGCCATCAACCAGGAGTTCCTAACCACCCGCAGCAACGAGAAGGCCGAGCTGCAGGAGCTCAACGACCGCTTTGCCAGCTTCATCGAGAAGGTGCGCTACCTGGAGCAGCAGAATGGTGCACTGCAGCAGGAGCTCAACCAGTTCAAGGGCCAGCAGCAGCATGGTCAGCCCAGCCGTGCCTCTGAGATCTTCCAGGAGGAGGTGAGGGACCTGCGCCGCCAACTGGACGCCACCGGAAAGGAGAGGGACCATTACCAAGTGGAGAGGGACAACTTGGCTGAAGACGTGGTCCTGCTCAAGCAGAGGTTGGAGGAAGAGGCCCAGAAGAGGGCAGATGCTGAGCATAACCTGGTTGCCTTCCGCAAGGATGTGGATGATGCCACATTGTCGCGTCTGGAGCTGGAGAGGAAGATCGAGTCTCTGATGGATGAGATTGAATTCCTCAAGAAGCTCCATGATGAAGAAATCCAGGACGTACAAGTGAGTGTCCAGACCCAGCAGCTGAAGATGGAGGTGGACAGCAGTACCGCCAGGCCTGACCTAACTGGTGCTCTGAGGGATATCCGGGCCCAGTATGAGACCATTGCCTTGAAGAACATGCAGGAATCTGAGGACTGGTACAAGTCCAAGTTTAATGATCTGACTGAGTCTGCAAAGCGCAACACTGATAATCTGAGGCAGGCCAAGCAGGAGGCCAATGAGTCCAGGAGGCAGATTCAGTCTCTTAGCTGTGAAATTGATGCACTGAAGAACACGAATGAAGCTCTGCTGAGGCAGATGCGTGAAATGGAGGACCAATTTGGCAATGAGATCGGCAACTACCAGGACAATGTAGGAAGGCTGGAGGATGAGATCCGCCACCTGAAGGACGAGATGGCTCGCCACCTTCGGGAGTACCAGGACCTCCTCAATGTCAAAATGGCTTTGGACATTGAGATTGCAACTTACCGTAAACTgctggagggggaggagagcAGGATTACTCTTCCCATGCTCAATATTGGCATGAGCAGTTACCAAGGCGAACGAGACTATGAACACACTCCAGGCAGCATGAGCAAGAAGACTGTGGTGATTAAGACCGTTGAGACTAGAGACGGAGAGGTGGTGAAGGAATccaggagggagaaggagagagagtcaGTCCGAACCGACAAGGACGACAAGGACGACAACGACGACGAGTAGAAAAAAACTGTTAGAAAGTGTTAAGGCCAGAGCcacgagagaaaaaaaaatacattaaataaatgAGGACCCCCCTCaacgccaaaaaaaaaaaaaaaaaaaaccctcttaTCTATATAGTCCTCATTCCTACTAGCTGTGTTAAATTGTCTAGTAGAAAGTCTCTCAGTATAGGTGCAATGTTGAATGAATCCCTTTAGACAGTGTCACTTTGGTGCTATTTAAACCACCCAACTTTTGCTAAACACTTGTGTCATCTGTAGGGCTATGCAAAGCCACTTTATTAACATATATGAAAATGTGACAGTCACCAACTGAAAAGACTTTTGCTGAATGTGCTTTGCAATGCTGTGTGTATCTGGCACGATTGATGAATGAATATGTAAGTGCAAATAAACTTCACTGGCGCAAATC

Function

symbol description
prph Predicted to enable structural molecule activity. Acts upstream of or within tissue regeneration. Predicted to be located in type III intermediate filament. Is expressed in nervous system. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 1. Orthologous to human PRPH (peripherin).

NR:

description
plasticin-like

GO: NA

KEGG:

id description
K07607 PRPH; peripherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799140.1 True 1952 mRNA 0.50 9 14631878 14637440

Neighbor

gene id symbol gene type direction distance location
pmela pmel,LOC103359383,LOC103375503 coding upstream 5552 14619517 ~ 14626326 (+)
olfml3b olfml3 coding upstream 28968 14599023 ~ 14602910 (+)
si:ch1073-456m8.1 LOC102799563 coding upstream 48143 14574133 ~ 14583735 (+)
ctsz ctsz coding upstream 175902 14452194 ~ 14455976 (+)
npepl1 npepl1 coding upstream 188073 14435641 ~ 14443805 (+)
timeless timeless coding downstream 958 14638398 ~ 14650434 (+)
LOC120558200 LOC104954920,LOC103376555,LOC104932002,LOC101062422 coding downstream 15357 14652797 ~ 14668454 (+)
LOC120557243 agap2 coding downstream 120399 14757839 ~ 14777895 (+)
smug1 smug1,LOC102792633 coding downstream 220021 14857461 ~ 14861776 (+)
LOC120556996 LOC104963001,LOC100707699,LOC101468050,LOC103376574,LOC102797035,LOC102310016,LOC102194854 coding downstream 314882 14952322 ~ 14962342 (+)
G38441 cdk2 non-coding upstream 21456 14607839 ~ 14610422 (+)
G38331 NA non-coding upstream 137138 14492903 ~ 14494740 (+)
G38317 kdm5b,LOC108235655 non-coding upstream 165194 14464974 ~ 14466684 (+)
G38276 NA non-coding upstream 323437 14305760 ~ 14308441 (+)
G38274 NA non-coding upstream 337721 14293933 ~ 14294157 (+)
G38449 NA non-coding downstream 5492 14642932 ~ 14690625 (+)
G38496 NA non-coding downstream 73286 14710726 ~ 14712134 (+)
G38495 NA non-coding downstream 75344 14712784 ~ 14714517 (+)
G38526 NA non-coding downstream 225882 14863322 ~ 14864107 (+)
G38538 NA non-coding downstream 278238 14915678 ~ 14976904 (+)
LOC120557952 mettl21b other upstream 294118 14335160 ~ 14337760 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 398341 14227097 ~ 14233537 (+)
tfeb tfeb other upstream 1103559 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 1259506 13319684 ~ 13372372 (+)
per3 per3 other upstream 1302546 13305415 ~ 13329332 (+)
cdk4 LOC107684003,LOC107701179 other downstream 103169 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 127857 14765297 ~ 14857069 (+)
G38517 NA other downstream 170912 14808352 ~ 14816436 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 227619 14865059 ~ 14874459 (+)
G38834 NA other downstream 1008071 15645511 ~ 15647851 (+)

Expression


Co-expression Network