LOC120558200 (LOC104954920,LOC103376555,LOC104932002,LOC101062422)


Basic Information

Item Value
gene id LOC120558200
gene name LOC104954920,LOC103376555,LOC104932002,LOC101062422
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14652797 ~ 14668454 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799141.1
AACTGACGAGACGACGCTGGATGGAGATAGGGAGGGGGGATTGCCTCGGagggaaaaaaactttttctccTTTGTTTTTTCAAGTGCCGTTTACTTCAGCGGCGAGAAAAGGAGAGGGGAGGTGTGTGATGGAGGATGGTTAAGATTTTCCAGAGAGAGGAGCTGGACTTGAAGTACTTTGGTGTGCTGCCACTGACGGGAACTCCAACGGTTAATTTAGATCCGAAGTtgggtgactgactgactgaggcGCCGCGGAGAATGGAAACTAGCCTCCTCACATCTGTGGTCACAGCTAGGTTCGCgttttaaaacatttgcatgAGGCCGGGATAGGAACCAAACGATGCCGTTGTTGGCGGTGTAGTGCAGTCCGTGTGTTTAAAAAGAGTTTAGGAAGAAAACCGGTTTTTCCCTGGTACTCTACCGccgctttttttttgttagtgaGTGGTGGTTGGCGTTTTTCCTGTTTGACAGGACCGATTGTCAGGGATAAGTTAACCTTACTGCGGAACGTACAGGCTCATCGTCACCAGACCTGCTCAGATGGACATGAGATAACGCCACCAAAAGTTCCACCCTTGTCCCAAACTCCAGCCTCTCACATTCACCCAGAATGGCAGATCCCACCGGGCTGAGCTCTGAAGGGGCCGGGGCAGGCACAGCCCTGGTCGACGCCTGTAGTTTGGAGATAGAGAGGAAGTATGACGTCATCCCTGCTGTCATCTGCTCCATGTGTTGCCTGTTTGGCATCATCTACTGCTTCTTTGGTTACCGCTGTTTCAAGGCTGTCATGTTCCTGTCTGGTCTGATGTTTGGCTCCGTCATCATTTTCTTGCTGTGTCACAAGGAGCACGTGCTGGACACCCAGCTGAGCGTGGAGGCCAGCGCAGGTATCGGCCTCGGTATCGGCCTGCTGTGCGGTCTGGTTACCATGTTGGTGCGAAGCGTCGGCCTCTTCATGACCGGCCTGCTGCTGGGCCTCCTCCTGGCTCTCGCCGCCCTGCTGGTCACTCACCAGTTCTACACCCCAACCACAGTCTGGGTCCCACTGGGTACACTTCTGGGAACGGGCATGCTGTTTGCTGTGCTGACGCTGCAGTGGCAAAAGCTCTTCACCATGCTCTCCACGGCTGTGTTCGGGGCAGCTATCATGACAGTGTGTGCTGATTACTTTGTGGAGATGCTGGTTTTGGCCATGCATGTATATGATTGCTTGCGCCTCACACCTGGGCCACCTCTCTGCTGGTACAGCTGGGTCATTCTGGGCGTCTGGCCCGCCCTCAGCCTCATAGGAGTACTGGTCCAGTGGAAACTGACAGATGACAGCTTCTCACACACTGAGGTCGTCATCAGCCGGAGACAGAAGAGAGTCCAGCTGATGCGGATTCGAGAGAAGGACGCCAAGAAGCGACCGCAGGCAGGTGGGCAGGAAGGCACGTACCGCCGTAAACCCACCCCAGTGAAACGTTACGCTGGGGATCTACTGGCACCGAGCTACCTGCAAAGTCTGCGGGACAGACAGATGGGCACAGGCACTTCCCTTAGCAGCCTAGGCACTGCCAACCACACCATGATCGACCTGGACTATGACACCGGGTCCACCGCGCCCCTTACAGCTACAACCCCAGTCGTCAGGGTCTGAGCGAAACGGAGATAAGGGACTACTTAGTGCTCTCTGGATCTCCAAATGTGTCTATCTAACGTAGAGTCGTAGAGTTAAAAAAACTGCTCCCCTCAGCTAAGGGTTTATTGTGCCCTTGATTGATTTGGAGCCAGGATGTGGGTCAGTCCTGGGTGTTCGGTGAAAGAGAATGCTGCTTTTTGGGGAGATGTAAGAAGTGTCACCGGTTTGGTGAAAGCTATAATATAACCACTGCAACCAGTGTGTTTCTCAGAGAAACACTTAAAAACAGATACTAACAAAGTAAGGTCCTCCATTTCCTCTCATCATGTATTAAATACATAAACAGCATGCACGAGCCTCAAAAACGGATGTATTTCTGTTGTAGTAGTGAATATGACAAAGCAATTTGTTTGACATtacatgtactgtacttaaaatGTTAGTCATTGCCGTTAAGTGTTGTGTTATTACCTGTCTTACCTGTTTAACTGTGTGCTTGTAGAATTTGTGAAAGTTTATCATTAAAATgactttgtattttgttttgacgGAGTTGGGTGAGAGAGTAAAATATGACATGCAGATGGATACATGGAGTATGACAAAGTGAAACAAATACTAAATGGTGCAAATACGGTTTGTATTTCCTGTCAGAATAGAGTAGGTGAAGAATTTAGACTgttgtgtatgcgtgtggagTGAAcgttttataatttaatttatataatgACCAAGTACATGGTAGGgttgaaaaaaggacaaaaaaaaacaaagcatgtttgttgttaatttgtagatttttaaataattatccATTGTGTTGTTTGAATTTTGCAGGGACAATACACTTGTTACCTGAATCTGTACATACCTGTTGATAGAAATTTCaaagataaataaatgtgtttgatACAAAA
>XM_039799142.1
AACTGACGAGACGACGCTGGATGGAGATAGGGAGGGGGGATTGCCTCGGagggaaaaaaactttttctccTTTGTTTTTTCAAGTGCCGTTTACTTCAGCGGCGAGAAAAGGAGAGGGGAGGTGTGTGATGGAGGATGGTTAAGATTTTCCAGAGAGAGGAGCTGGACTTGAAGTACTTTGGTGTGCTGCCACTGACGGGAACTCCAACGGTTAATTTAGATCCGAAGTtgggtgactgactgactgaggcGCCGCGGAGAATGGAAACTAGCCTCCTCACATCTGTGGTCACAGCTAGGTTCGCgttttaaaacatttgcatgAGGCCGGGATAGGAACCAAACGATGCCGTTGTTGGCGGTGTAGTGCAGTCCGTGTGTTTAAAAAGAGTTTAGGAAGAAAACCGGTTTTTCCCTGGTACTCTACCGccgctttttttttgttagtgaGTGGTGGTTGGCGTTTTTCCTGTTTGACAGGACCGATTGTCAGGGATAAGTTAACCTTACTGCGGAACGTACAGGCTCATCGTCACCAGACCTGCTCAGATGGACATGAGATAACGCCACCAAAAGTTCCACCCTTGTCCCAAACTCCAGCCTCTCACATTCACCCAGAATGGCAGATCCCACCGGGCTGAGCTCTGAAGGGGCCGGGGCAGGCACAGCCCTGGTCGACGCCTGTAGTTTGGAGATAGAGAGGAAGTATGACGTCATCCCTGCTGTCATCTGCTCCATGTGTTGCCTGTTTGGCATCATCTACTGCTTCTTTGGTTACCGCTGTTTCAAGGCTGTCATGTTCCTGTCTGGTCTGATGTTTGGCTCCGTCATCATTTTCTTGCTGTGTCACAAGGAGCACGTGCTGGACACCCAGCTGAGCGTGGAGGCCAGCGCAGGTATCGGCCTCGGTATCGGCCTGCTGTGCGGTCTGGTTACCATGTTGGTGCGAAGCGTCGGCCTCTTCATGACCGGCCTGCTGCTGGGCCTCCTCCTGGCTCTCGCCGCCCTGCTGGTCACTCACCAGTTCTACACCCCAACCACAGTCTGGGTCCCACTGGGTACACTTCTGGGAACGGGCATGCTGTTTGCTGTGCTGACGCTGCAGTGGCAAAAGCTCTTCACCATGCTCTCCACGGCTGTGTTCGGGGCAGCTATCATGACAGTGTGTGCTGATTACTTTGTGGAGATGCTGGTTTTGGCCATGCATGTATATGATTGCTTGCGCCTCACACCTGGGCCACCTCTCTGCTGGTACAGCTGGGTCATTCTGGGCGTCTGGCCCGCCCTCAGCCTCATAGGAGTACTGGTCCAGTGGAAACTGACAGATGACAGCTTCTCACACACTGAGGTCGTCATCAGCCGGAGACAGAAGAGAGTCCAGCTGATGCGGATTCGAGAGAAGGACGCCAAGAAGCGACCGCAGGCAGGTGGGCAGGAAGAGCTACCTGCAAAGTCTGCGGGACAGACAGATGGGCACAGGCACTTCCCTTAGCAGCCTAGGCACTGCCAACCACACCATGATCGACCTGGACTATGACACCGGGTCCACCGCGCCCCTTACAGCTACAACCCCAGTCGTCAGGGTCTGAGCGAAACGGAGATAAGGG
>XM_039799143.1
AACTGACGAGACGACGCTGGATGGAGATAGGGAGGGGGGATTGCCTCGGagggaaaaaaactttttctccTTTGTTTTTTCAAGTGCCGTTTACTTCAGCGGCGAGAAAAGGAGAGGGGAGGTGTGTGATGGAGGATGGTTAAGATTTTCCAGAGAGAGGAGCTGGACTTGAAGTACTTTGGTGTGCTGCCACTGACGGGAACTCCAACGGTTAATTTAGATCCGAAGTtgggtgactgactgactgaggcGCCGCGGAGAATGGAAACTAGCCTCCTCACATCTGTGGTCACAGCTAGGTTCGCgttttaaaacatttgcatgAGGCCGGGATAGGAACCAAACGATGCCGTTGTTGGCGGTGTAGTGCAGTCCGTGTGTTTAAAAAGAGTTTAGGAAGAAAACCGGTTTTTCCCTGGTACTCTACCGccgctttttttttgttagtgaGTGGTGGTTGGCGTTTTTCCTGTTTGACAGGACCGATTGTCAGGGATAAGTTAACCTTACTGCGGAACGTACAGGCTCATCGTCACCAGACCTGCTCAGATGGACATGAGATAACGCCACCAAAAGTTCCACCCTTGTCCCAAACTCCAGCCTCTCACATTCACCCAGAATGGCAGATCCCACCGGGCTGAGCTCTGAAGGGGCCGGGGCAGGCACAGCCCTGGTCGACGCCTGTAGTTTGGAGATAGAGAGGAAGTATGACGTCATCCCTGCTGTCATCTGCTCCATGTGTTGCCTGTTTGGCATCATCTACTGCTTCTTTGGTTACCGCTGTTTCAAGGCTGTCATGTTCCTGTCTGGTCTGATGTTTGGCTCCGTCATCATTTTCTTGCTGTGTCACAAGGAGCACGTGCTGGACACCCAGCTGAGCGTGGAGGCCAGCGCAGGTATCGGCCTCGGTATCGGCCTGCTGTGCGGTCTGGTTACCATGTTGGTGCGAAGCGTCGGCCTCTTCATGACCGGCCTGCTGCTGGGCCTCCTCCTGGCTCTCGCCGCCCTGCTGGTCACTCACCAGTTCTACACCCCAACCACAGTCTGGGTCCCACTGGGTACACTTCTGGGAACGGGCATGCTGTTTGCTGTGCTGACGCTGCAGTGGCAAAAGCTCTTCACCATGCTCTCCACGGCTGTGTTCGGGGCAGCTATCATGACAGTGTGTGCTGATTACTTTGTGGAGATGCTGGTTTTGGCCATGCATGTATATGATTGCTTGCGCCTCACACCTGGGCCACCTCTCTGCTGGTACAGCTGGGTCATTCTGGGCGTCTGGCCCGCCCTCAGCCTCATAGGAGTACTGGTCCAGTGGAAACTGACAGATGACAGCTTCTCACACACTGAGGTCGTCATCAGCCGGAGACAGAAGAGAGTCCAGCTGATGCGGATTCGAGAGAAGGACGCCAAGAAGCGACCGCAGGCAGAGCTACCTGCAAAGTCTGCGGGACAGACAGATGGGCACAGGCACTTCCCTTAGCAGCCTAGGCACTGCCAACCACACCATGATCGACCTGGACTATGACACCGGGTCCACCGCGCCCCTTACAGCTACAACCCCAGTCGTCAGGGTCTGAGCGAAACGGAGATAAGGG

Function

NR:

description
PREDICTED: transmembrane protein 198-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799141.1 True 2547 mRNA 0.48 5 14652797 14668454
XM_039799142.1 False 1607 mRNA 0.55 5 14652797 14667573
XM_039799143.1 False 1595 mRNA 0.55 5 14652797 14667573

Neighbor

gene id symbol gene type direction distance location
timeless timeless coding upstream 2363 14638398 ~ 14650434 (+)
prph prph,LOC103375502 coding upstream 15357 14631878 ~ 14637440 (+)
pmela pmel,LOC103359383,LOC103375503 coding upstream 26471 14619517 ~ 14626326 (+)
olfml3b olfml3 coding upstream 49887 14599023 ~ 14602910 (+)
si:ch1073-456m8.1 LOC102799563 coding upstream 69062 14574133 ~ 14583735 (+)
LOC120557243 agap2 coding downstream 89385 14757839 ~ 14777895 (+)
smug1 smug1,LOC102792633 coding downstream 189007 14857461 ~ 14861776 (+)
LOC120556996 LOC104963001,LOC100707699,LOC101468050,LOC103376574,LOC102797035,LOC102310016,LOC102194854 coding downstream 283868 14952322 ~ 14962342 (+)
faim2b LOC103376611,LOC101076527,LOC100707431,LOC101467547,LOC102195132 coding downstream 297253 14965707 ~ 14969461 (+)
LOC120556827 LOC103376578 coding downstream 351019 15019473 ~ 15118158 (+)
G38441 cdk2 non-coding upstream 42375 14607839 ~ 14610422 (+)
G38331 NA non-coding upstream 158057 14492903 ~ 14494740 (+)
G38317 kdm5b,LOC108235655 non-coding upstream 186113 14464974 ~ 14466684 (+)
G38276 NA non-coding upstream 344356 14305760 ~ 14308441 (+)
G38274 NA non-coding upstream 358640 14293933 ~ 14294157 (+)
G38496 NA non-coding downstream 42272 14710726 ~ 14712134 (+)
G38495 NA non-coding downstream 44330 14712784 ~ 14714517 (+)
G38526 NA non-coding downstream 194868 14863322 ~ 14864107 (+)
G38538 NA non-coding downstream 247224 14915678 ~ 14976904 (+)
G38670 NA non-coding downstream 582115 15250569 ~ 15250933 (+)
LOC120557952 mettl21b other upstream 315037 14335160 ~ 14337760 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 419260 14227097 ~ 14233537 (+)
tfeb tfeb other upstream 1124478 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 1280425 13319684 ~ 13372372 (+)
per3 per3 other upstream 1323465 13305415 ~ 13329332 (+)
cdk4 LOC107684003,LOC107701179 other downstream 72155 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 96843 14765297 ~ 14857069 (+)
G38517 NA other downstream 139898 14808352 ~ 14816436 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 196605 14865059 ~ 14874459 (+)
G38834 NA other downstream 977057 15645511 ~ 15647851 (+)

Expression


Co-expression Network