LOC120558214 (synpr,LOC104965753)


Basic Information

Item Value
gene id LOC120558214
gene name synpr,LOC104965753
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9967082 ~ 9995755 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799171.1
TCTTCCGGTTGGAGTCGGAATCAGAGCCGAGAGCCACGCGCGACAGACGCATCAACCGGTCTTGGCTTGCGGTTTGAGATTGTTTACATTCAATCAAACAAGTAAGAAAGAAAGTAGGCTAGCCTGCTGCTGAAATGGACACCTCTGATCAGCTTGCCTCTGTGGGGACGTTTCAAGTGCTAAAATTACCTCTGGGATTTATCCGTGTTTTGGAATGGCTCTTTGCCATTTTTGCATTTGCGACATGTGGGGGCTACTCTGGGCAGCTGCGGGTTAGTGTGGACTGCATGGAGAAGGCCCTAAGCAACCTCAGCATTGGCATCGACTTTGCTTATCCTTTCAGGTTGCACCAGGTGTCCTTTGAAGCGCCCGTGTGTGAGGGTATTAGGAGGGAACGCGTTTTCCTTATTGGAGACTATTCATCCTCTGCAGAGTTCTTCGTCACCATTGCGGTCTTTGCCTTCCTGTATTCCCTCATGGCGACCATTGTCTACATCTTCTTTCAGAACAAGTACCGTGAAAACAACCGAGGACCACTCATTGACTTTGTAGTGACTGTGGTGTTCTCCTTCATGTGGCTGGTCAGTTCTTCTGCCTGGGCCAAGGCTTTGTCTGAGGTGAAAATGGCCACTGATCCAGATGAGGTGCAGCTCCTTATCTCTGCCTGCAAAGTCCAGACCAACAAGTGTGGCTCTCTGCATGGACCACGCTGGTCCGGACTCAACACCTCAGTGGTTTTTGGGTTTCTCAACTTTGTTCTATGGGCTGGGAACATCTGGTTTGTCTTTAAGGAGACCGGTTGGCACAAGGGCGCTACAAGGTTAGCAGGCGGGGCATCTGAGAAACAGTCCAACACCTTTAACCAGCAGTGCTACAACCAGGGAAGCTTCGACCAGTCAGGGAGCTACAACACCCAGGGAAACCTCGGACAGCCATCTGAGTACAGCCAGGTGGGAGGGCCCACCTCCTACTCCAATCAAATGTAGCCGTGCCTTTTTCGATTCGTGAGTGGCACTTCTGCATTTTAAACAAAGGCAATCAGGGGGTtatcagagagagaaaaaaatatggTCATAAAATAAGGCATCAAAGGTGTCAAGTACACTCACTTTAGATACAAGTATTGTTTGGTATTGTACAAAATTATTAGATATAGTCTTTTACTCCTTCTCTGTCAGAGGTGTTGTTTGCTGAATGTTGTATTTCTTGTAGTTTGAAACTCGTAAGTGAtcgcctctctctctgtgcttgGTAATGGACATTCACTGTTACGACTGGATGTCTTTTTCAAACTGGTTTGCACTGTTTTGGAAGGAAAAAGTGCTCTatgtttgtatacatttttgtttcaaaaatgGGGTCGACTCAGTGCATGATGTCTTACTGTACACGTGCTAATATGCTCTCTGTGAAACTAGTAAAGTAAACAGTTTATCTCTCAAAGTTTACAAAGATCACATGCCCCCGAATCATTACTGAAAGTTTATTTAGATCCCTATTATAACATGTATAttcttttttctaatctaaCTGGAACTGTATTTTGATATTGGGTGTTTCTTATTTAGATACATATTCAGAATTAGTGACATTTCTGTTTAATTTGTTAGAATAAATAGATTCCAACTCATGTCTGACATTGATCATGTCAGAAAGTCTAAACACTTAATTtacaaaaaactgtaaactgcaaaaaaaacactatacaGGAATTGTGTAAGACAAAAGTAATGTATATGCAACCACTGCAGTATGATTATGTTCCCATGGTTTCCACTTCTTAGTTGCATCTGTACAGACAACATCACTGCCGTTTCATATTTATGATGTAAAGAGGAAGATGTTCTCCCAAATTGTTTACAAGTGGCCGATCCTGTTGCAAattgctatgactgttttctaTGAACCTAAGTTATACCTCTCTAAAGCATGCCCAGAGTATTCTTTTACACTGCTAAAGCCCAGTAAAAAAGGCACATCAGTACCACAGTGACAATAGGGCTCATAACTAATATTGAGTTTTTGACTTTAAAATCCCAATTCAGTCTTCAGTCAAAAACTGCAATTTATGTATAGTAATATTCAAAGGATAATTCCCGTTTGCTGTTTGATATGACTTGTGCAACCCTGTTTCTTGACCTCCAGCATGTGACTTGCATCAGTATAATGAAGCAGATTGAACatccatgtacagtatgtatcatAGTTTGACATCCATGATAAATGTGTACGGGTCCATATACTGCCACATGCATTTAGTTCATGAGTGTGGATATTTTACAGGCATTCATCCTAATAAAGATGCACAAATTTGCGCATAAACGATCTGTT
>XM_039799172.1
TGTTTCAGCAGTACTCAAGTAGGATTCAGTACTGGATTAGATCCTCTCGTCTCCAATGTGTATGGTTATATTTGCTCCGCTCTTTGCCATTTTTGCATTTGCGACATGTGGGGGCTACTCTGGGCAGCTGCGGGTTAGTGTGGACTGCATGGAGAAGGCCCTAAGCAACCTCAGCATTGGCATCGACTTTGCTTATCCTTTCAGGTTGCACCAGGTGTCCTTTGAAGCGCCCGTGTGTGAGGGTATTAGGAGGGAACGCGTTTTCCTTATTGGAGACTATTCATCCTCTGCAGAGTTCTTCGTCACCATTGCGGTCTTTGCCTTCCTGTATTCCCTCATGGCGACCATTGTCTACATCTTCTTTCAGAACAAGTACCGTGAAAACAACCGAGGACCACTCATTGACTTTGTAGTGACTGTGGTGTTCTCCTTCATGTGGCTGGTCAGTTCTTCTGCCTGGGCCAAGGCTTTGTCTGAGGTGAAAATGGCCACTGATCCAGATGAGGTGCAGCTCCTTATCTCTGCCTGCAAAGTCCAGACCAACAAGTGTGGCTCTCTGCATGGACCACGCTGGTCCGGACTCAACACCTCAGTGGTTTTTGGGTTTCTCAACTTTGTTCTATGGGCTGGGAACATCTGGTTTGTCTTTAAGGAGACCGGTTGGCACAAGGGCGCTACAAGGTTAGCAGGCGGGGCATCTGAGAAACAGTCCAACACCTTTAACCAGCAGTGCTACAACCAGGGAAGCTTCGACCAGTCAGGGAGCTACAACACCCAGGGAAACCTCGGACAGCCATCTGAGTACAGCCAGGTGGGAGGGCCCACCTCCTACTCCAATCAAATGTAGCCGTGCCTTTTTCGATTCGTGAGTGGCACTTCTGCATTTTAAACAAAGGCAATCAGGGGGTtatcagagagagaaaaaaatatggTCATAAAATAAGGCATCAAAGGTGTCAAGTACACTCACTTTAGATACAAGTATTGTTTGGTATTGTACAAAATTATTAGATATAGTCTTTTACTCCTTCTCTGTCAGAGGTGTTGTTTGCTGAATGTTGTATTTCTTGTAGTTTGAAACTCGTAAGTGAtcgcctctctctctgtgcttgGTAATGGACATTCACTGTTACGACTGGATGTCTTTTTCAAACTGGTTTGCACTGTTTTGGAAGGAAAAAGTGCTCTatgtttgtatacatttttgtttcaaaaatgGGGTCGACTCAGTGCATGATGTCTTACTGTACACGTGCTAATATGCTCTCTGTGAAACTAGTAAAGTAAACAGTTTATCTCTCAAAGTTTACAAAGATCACATGCCCCCGAATCATTACTGAAAGTTTATTTAGATCCCTATTATAACATGTATAttcttttttctaatctaaCTGGAACTGTATTTTGATATTGGGTGTTTCTTATTTAGATACATATTCAGAATTAGTGACATTTCTGTTTAATTTGTTAGAATAAATAGATTCCAACTCATGTCTGACATTGATCATGTCAGAAAGTCTAAACACTTAATTtacaaaaaactgtaaactgcaaaaaaaacactatacaGGAATTGTGTAAGACAAAAGTAATGTATATGCAACCACTGCAGTATGATTATGTTCCCATGGTTTCCACTTCTTAGTTGCATCTGTACAGACAACATCACTGCCGTTTCATATTTATGATGTAAAGAGGAAGATGTTCTCCCAAATTGTTTACAAGTGGCCGATCCTGTTGCAAattgctatgactgttttctaTGAACCTAAGTTATACCTCTCTAAAGCATGCCCAGAGTATTCTTTTACACTGCTAAAGCCCAGTAAAAAAGGCACATCAGTACCACAGTGACAATAGGGCTCATAACTAATATTGAGTTTTTGACTTTAAAATCCCAATTCAGTCTTCAGTCAAAAACTGCAATTTATGTATAGTAATATTCAAAGGATAATTCCCGTTTGCTGTTTGATATGACTTGTGCAACCCTGTTTCTTGACCTCCAGCATGTGACTTGCATCAGTATAATGAAGCAGATTGAACatccatgtacagtatgtatcatAGTTTGACATCCATGATAAATGTGTACGGGTCCATATACTGCCACATGCATTTAGTTCATGAGTGTGGATATTTTACAGGCATTCATCCTAATAAAGATGCACAAATTTGCGCATAAACGATCTGTT

Function

symbol description
synpr Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin).

NR:

description
PREDICTED: synaptoporin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799171.1 True 2331 mRNA 0.42 6 9967082 9995755
XM_039799172.1 False 2192 mRNA 0.41 5 9967082 9974470

Neighbor

gene id symbol gene type direction distance location
LOC120558233 NA coding downstream 4539 9957831 ~ 9962543 (-)
LOC120557887 NA coding downstream 9710 9935855 ~ 9957372 (-)
LOC120557886 NA coding downstream 9724 9950010 ~ 9957358 (-)
LOC120557909 NA coding downstream 34624 9927026 ~ 9932458 (-)
LOC120557475 NA coding downstream 47139 9888179 ~ 9919943 (-)
zbtb49 zbtb49 coding upstream 11575 10007330 ~ 10013719 (-)
slc2a9l2 slc2a9 coding upstream 105974 10101729 ~ 10201751 (-)
wdr1 wdr1,LOC102791765 coding upstream 209231 10204986 ~ 10216132 (-)
cast NA coding upstream 298780 10294535 ~ 10333383 (-)
rfesd rfesd coding upstream 426089 10421844 ~ 10424787 (-)
G37125 NA non-coding downstream 79666 9886362 ~ 9887416 (-)
G37093 psmd6 non-coding downstream 84051 9880039 ~ 9883031 (-)
G37073 NA non-coding downstream 233704 9731681 ~ 9733378 (-)
G37008 NA non-coding downstream 736126 9230470 ~ 9230956 (-)
G37007 NA non-coding downstream 736683 9230061 ~ 9230399 (-)
G37145 lyar,LOC102793231 non-coding upstream 17972 10013727 ~ 10015053 (-)
G37146 NA non-coding upstream 19624 10015379 ~ 10016724 (-)
G37158 NA non-coding upstream 46492 10042247 ~ 10043822 (-)
G37159 NA non-coding upstream 48413 10044168 ~ 10044435 (-)
G37165 NA non-coding upstream 64049 10059804 ~ 10060407 (-)
G37045 lrig1 other downstream 571512 9394739 ~ 9395570 (-)
LOC120558079 fam19a1,LOC101482978,LOC107385433,LOC108244096,LOC103386186,LOC106518519,LOC101163164,LOC102209545 other downstream 933415 8906439 ~ 9033667 (-)
mustn1b mustn1,LOC107385427 other downstream 1344260 8619087 ~ 8622822 (-)
LOC120557774 ucn2,LOC104952568,LOC108241195,LOC106518500,LOC100704776 other downstream 1552149 8412726 ~ 8414933 (-)
LOC120557337 LOC104966450 other downstream 2262637 7667664 ~ 7704445 (-)
LOC120556768 LOC104965754,LOC103359409,LOC102210396,LOC101479743,LOC102082439,LOC102300053 other upstream 3241 9998996 ~ 10006173 (-)
rhobtb3 glrx,rhobtb3,LOC102786935 other upstream 392162 10387917 ~ 10419906 (-)
tpgs2 tpgs2 other upstream 536771 10532526 ~ 10536353 (-)
fam219aa fam219a,LOC101484940,LOC100701621 other upstream 936480 10932235 ~ 10943639 (-)
LOC120557925 tmem233 other upstream 987315 10983070 ~ 10988818 (-)

Expression


Co-expression Network