LOC120558220


Basic Information

Item Value
gene id LOC120558220
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 37951640 ~ 37956976 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799181.1
aagaagaagaagaagaagaagaagaagaagaagaagaaggttcCGACTTCTTTCCTGTTCTCCGGTTAGCTGTCCccctgaaaatgaaaatgcctACACTCCAGTTACTGAGAACGTACGTCAACCAGCGCCTGACTGTGGCTGTTGAAGATATAATCGAGATGTTTGAAAGAACCATAACCGAGTACGAGGAGGAAATGTATCGCCAGCGCAGGCTGCTGGGAGCTGAGCAGTCCGGCGGCGGCGCCGCCAAGACAGTGTTCAGCAACCAAACAGGTGTGTCTCAGGAAATCCAGCCGCTGGTTATCAATCCAAAGGTTCCCCCTGAACAGCAGGAGTGGGGCCCTGGTCCGGACCCGGAGGAGCCCCCGGAGCCCCcgcacattaaagaggaaccaGAGGAGGTCTGGATCAGACAGGGGCTTCAGCGGCTGGAGGGGGCTGACATCCCAGAGTTCCAGTTCCCTGCAGTGTCTGTAAAACGTGAAGACGATGACGAGAAACCTCACTCCGCAGTGCTCCATCAAAGGCAAACGGAGGAGCCCAGAGAGGCAGACCCTCCAGCTCAGCAGACAGGAGCCGGGGCCGCCGTCCGCAACTGTGACGCGTCAGAAGCGGCCTTTGACTTGGACGCGGCCGTTTTTTTAAAAGCGGCGAGCGACGGCCAGTTTTTCCTCTCGCAGTGTTTTGAAACTGAGACCGAAGCCTCGGACGACGGCTGGAAGCACGCGATCGAGCCTCAGCCGCCCTGCGACCCGCTGAAAGACAGCGAAGCCGCGTCTCCTCCGAGAGCTCACGGTCAGGGGGAAGTCTATAAATGCCCGGCGTGTAGCAAAACCTTTAAGCACCACACGGATCTGCAGAGGCACGTCACAAGCCACACAGGGGAGAGGCCGTTTGACTGTGCCGAGTGTGGCAAGACGTTCCGGCACAAGGGAAGTTTGCACATACACAtgaggaaacacacaggagagaagccttttCGTTGCCTAGTTTGCGGAAAGAACTTCACCCAGAGCGGAACGTTGGCCGCGCACGTGAGGATTCACACCGGAGAgaagcctttcagctgctcgGTGTGTAACAAAAGGTACAATGAGAGAGGGACACTGGCGCGACACATGAGGGTCCACACCGGAGAGAAGCCGTTCACGTGCTCGCTGTGCGGTAAACGATTCAGCGAGAAGGGCAATCTGACTAAACACAAGAGACTCCACACGGGGGAGAAACCGTTCAGTTGCCGTGCATGTGAGAAGAATTTTAGTTTGCTGTCGCACCTCCGAAACCACAAATGTCCCGGTGAGAAGAGCGGTGGAACTGTAGAGCAGCCGCTTCAGCTGAAATCGTAGACCGTCAAGtgattttaagaaaaaaaaagaatgtaattCTTTGAATGCTTTGTGATTTACAGTTGTTTCACTCCCAGAGTTTCCGCGGGGTCTTCAAAAAGTCTAAAAACTTCAAAGTCAAAATGTTAGGCCTTTTTAAAAGGTCGTATATTCACTGACGTGTTGTGTTTTATGCCTTAAATAATTTTGAACtcgtcttaattttcctacgtccatgtaacgctacctcctaatgctcattgaaatgctACCGCagcactttttaatttttttattccgtggtgttgtagttctttcctTCACTAGTCCAAAAATGATCCCATGTATTTCattacaaatgagaccaacacgCAACTTGTGATGTTGACTTATTTTGTCAGCTTTCGTGTTATCGGCGCGAGTCTCCTGGGGATTGTACCACAGACTCATTTCAGACGTTTCCATAATATAGGTCTTGAATTTCATTCGTAATGGTCTAAAAAAGGcttaaatttgactttgtgAAACctgcaaccctgtctcctagcCTTTAATccctaatcacacacacacatgcgcgacTGCAATCggctaacttgttgctctcgCCACCAAATATAACGTTTCACACAATATAaggctttttcctcgccatcgCGATATCAACCGCTGCAGTAAACGCATGGCGAAAGGCTTGCGACCTATCGGGAAAGACACTCCGAAATTTTGTGTAAATTGAAAGCAATTATCAGCAGAAAacaaactgcactttaaaaagtAAATGCTCCTtcttttagtggtgccttttttttttttttttttatatatattcaaTTGAACCCTATCTGTGAATTGTATTTTGATGACCGACGGTTTTAATACAAGTGCTTGTTTTGAAGAAACAACTCGCACAGCCCAAAAATTCTAATGTGCAGGCGCGTTGGAAAATATCAGCAACTTAACGCACTCTGCCCTTTACTCTTCACcgtttgtttacaaaaaaattgTTTCGGTCCCTCCGCACCTTCGTCAAGAGTCTGACTCTTAAACAGGAGAGTCAGACCGAGATAAAGAACAGACACGTGAGAGACaaattaacattaaaataaagggGCAGCGTTAAATAGTGAAACCATTAAATAATCAGTGTATAATAATCAGAAAATGTGCCTTTATGatgtgtactgtacatgtgtatgGTCCCCTTGTGCGATGCCATTGTGCCTGAACACATCCTGTGTGGACACAGATGGACGactgctgctgcttctctgCTAGCACGCTGCTAATGCTACGCCTGCTGTGTACACGTGGTGCAGGCTAACCCGccggctgtagcttcataaCCATATCCATTAAGCCTCCCtttttcttatgttaaacagctattttgtatatatttgtcactgtatttattgtttgtttttttcctatgaatgtttaatatgtctgttttgtttgtgtgtgcaccaaccaccaaggcaaagTCCTTGTAACGGTAACTTACTTTAGCAATAAACCTGATTCTGATAAAGA

Function

GO: NA

KEGG:

id description
ko03420 Nucleotide excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799181.1 True 2864 mRNA 0.47 2 37951640 37956976

Neighbor

gene id symbol gene type direction distance location
fhit fhit,LOC106632879 coding upstream 216323 37312062 ~ 37735317 (+)
cadpsa LOC103364890 coding upstream 1275385 36431405 ~ 36676255 (+)
LOC120556721 NA coding upstream 1583230 36366520 ~ 36368410 (+)
camk1ga LOC108240302,LOC103373651 coding upstream 1623708 36301946 ~ 36327932 (+)
LOC120557073 LOC103374592,LOC100706250,LOC102300861,LOC101476702,LOC102207203,LOC102780650 coding upstream 1702154 36243657 ~ 36249486 (+)
golt1a golt1a coding downstream 140322 38097298 ~ 38103946 (+)
LOC120557040 LOC106528837,LOC107102779 coding downstream 184617 38141593 ~ 38142268 (+)
LOC120557051 LOC106958509,LOC107690788,LOC107671222,LOC106963510,LOC107382435 coding downstream 189764 38146740 ~ 38147062 (+)
LOC120557039 si:dkey-261m9.15,LOC103462478,LOC102204254,LOC107386469,LOC103379246,LOC101485372,LOC103381127,LOC103395676 coding downstream 192995 38149971 ~ 38150381 (+)
LOC120557047 LOC104932967,LOC104935308 coding downstream 278587 38235563 ~ 38236230 (+)
G44265 NA non-coding upstream 1863 37949515 ~ 37949777 (+)
LOC120556894 NA non-coding upstream 119021 37764777 ~ 37832619 (+)
G44247 NA non-coding upstream 200328 37751067 ~ 37751312 (+)
G44232 NA non-coding upstream 649124 37302224 ~ 37302516 (+)
G44153 NA non-coding upstream 1272344 36678292 ~ 36679296 (+)
G44325 LOC104935308,LOC104932967 non-coding downstream 202961 38159937 ~ 38160694 (+)
LOC120557056 samd3,LOC101476819 non-coding downstream 270603 38227579 ~ 38228350 (+)
LOC120557055 NA non-coding downstream 290327 38247303 ~ 38248320 (+)
G44387 LOC104935308,LOC107719244,LOC104932967 non-coding downstream 374404 38331380 ~ 38332050 (+)
G44402 NA non-coding downstream 453026 38410002 ~ 38412477 (+)
fezf2 fezf2 other upstream 1240345 36703255 ~ 36711295 (+)
trnac-gca_18 NA other upstream 1989030 35962539 ~ 35962610 (+)
G43924 NA other upstream 2285599 35664143 ~ 35666041 (+)
LOC120556915 NA other upstream 2465405 35463772 ~ 35486235 (+)
G43656 NA other upstream 3284458 34665236 ~ 34667182 (+)
plekha6 plekha6 other downstream 3730 37960706 ~ 38096072 (+)
LOC120557027 NA other downstream 209206 38166182 ~ 38174494 (+)
G44436 NA other downstream 655661 38612637 ~ 38612971 (+)
LOC120557667 LOC102775714,LOC103375741 other downstream 943596 38900572 ~ 38903056 (+)
LOC120557670 NA other downstream 996142 38953118 ~ 38981733 (+)

Expression


Co-expression Network