LOC120558222 (LOC104936998,LOC102790234)


Basic Information

Item Value
gene id LOC120558222
gene name LOC104936998,LOC102790234
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12223455 ~ 12227890 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799184.1
GTCTACAGCCAGACACTCAGAGGGACTCGGCTCTCCTTTTGAAGACTGCTCATCTCCTGTTCTCCTCTTCTCAGAGCATTGATAACCTTTACCACTGCAAACATGAGGAAGGCATACTCAGTCAGCTCTAGTAGCAGCACCAGAAGGTCCTTTGCACCAGTTAGCAGCTACTCTGTAAAAAGATCAAGTTATGGtgctggagctggagctggTGGTCTTGGTTTTAGTATGTCTTCAATGGGTGGTGGATTAGGTGGTGGTTCTGGTAGTTATGGCTTTACTTCTAGTCAAACAGGAGGCGGCTTCATCCCTCCACAGATCACAGCTGTCCAAGTCAACCAGAGCCTGCTGACCCCTCTGAACCTGGATATTGACCCCACCATCCAGGTTGTCCGCACTCAGGAGAAGGATCAGATCAAGACCCTCAACAACCGCTTCGCCTCCTTCATCGACAAGGTACGTTTCCTGGAACAGCAGAACAAGATGCTGGAGACCAAATGGAGCCTCCTGCAGGACCAGACCACCACCCGCTCCAACATCGATGCCATGTTCGAGGCCTACATTGCCAACCTGCGCAGACAGCTCGATGGGCTGGGCAATGAGAAGGGCAAGCTGGAGGGAGAGCTGAGGAACATGCAGGGCCTGGTTGAGGACTTCAAGGCGAAGTATGAAGATGAAATCAACAAACGTGCAGCTGCAGAGAACGAATTTGTGCTCCTGAAGAAGGACGTTGATGCTGCCTACATGAACAAGGTGGAGCTAGAGGCCAGGGCTGATGCTCTTCAGGATGAGATCAACTTCCTCAGGGCCGTCTATGAGACTGAGCTTCGTGAGCTGCAGAGCCAGATCAAGGACACCTCCGTCATCGTGGAGATGGACAACAGCCGTAACCTGGACATGGATTCTATTGTGGCTGAAGTGCGTGCTCAGTATGAGGACATTGCCAACCGCAGCAAGGCGGAAGCAGAGACCTGGTACAAACAGAAGtatGAGGAGATGCAGAGCACTGCCGGACAGTATGGTGACGACCTGCGCACAACCAAGGCTGAGATTTCTGAGCTAAACCGCATGATCTCCCGTCTTCAGAATGAGATTGAGGCCGTCAAGGGACAGAGGGTCAGCCTGGAGGCTCAGATTGCAGAGGCTGAGGAGCGTGGTGAGCTGGCAGTGAAGGATGCCAAGCTCCGCATTAAGGATCTGGAGGATGCTCTGCAGAGAGCCAAGCAGGACATGACCCGCCAGGTGCGCGAATACCAGGAACTGATGAACGTCAAGCTGGCCCTGGACATCGAAATCGCCACCTACAGGAAACTGCTGGAAGGAGAGGAGTCCAGACTGGCCAGTGGTGGCGCAAGTGCAACCATCCATGTGCAGCAGACCTCTGGAGGTGGTGGATACTCCAGCTCCAGCTCCGGTGGTGGATTCGGCTATGGTGGCAGCAGCTTGTCTGGTGGTTATGGCGGTACTGTTACCAAGTCCACAGTCTCATCAACCAGTTCCAGGAGATTGTATTAAAAAGAAGAGCCAGTCCTCTTCCCCTTCAGAAACTCTTGAATTTGATCTAAATCTGTACCCAGTCATGGTGCTATGCAATACCATTAAGCAGGTTCAACAAGAGAGCTGAATATATTGTTACACTGATATCAATTGGGTTTCAACAATCCCTGGCAGCTTTTCTTACTCTTCTTGATAGTAAGAAATTCTGTTTAACATCATTTAACAAGAGTTTCTGAAGGTAAACATGGCCTTAAACACCCAAGAGCcaaaataaagtgttaaaactaagcaaagaaaacatttgaaaatctgTACTCAATCTTGTTAATCTAAACACTTTTTGTACTGCAGTGCACTGATGAATTGCTCTGAAATAAGATTCTGAAGTGGGACGCCTATATTTTTAATGCTCCAGTTTTCAGTTGATGTCTTCATTCCTACATTTGAGTACTGATATTAGTAAGGGGAGCAAGTCACTGACCAAATCTGATCactggagaaaaacaaaaaaatgtaatttgtgtgACTTTACATGTTTACAGTTTCCCTTTGAACAGATTGGCTACTGGCTTATTCTTGGTACTGTGCTGTCAAATTTTTTCATGCTCAGTTTTGCCTTTACTTGCCTTCAAGATAAAATTATGTTGAAACCagatttattttgtaaaagcctTCCTACAAACATTACTGATGAATGTcgcagaaaatgacatcaaatgattttgaataaaataaatctgaGAACTAAAATGA

Function

NR:

description
PREDICTED: keratin, type II cytoskeletal 8-like

GO: NA

KEGG:

id description
K07605 KRT2; type II keratin, basic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799184.1 True 2250 mRNA 0.47 9 12223455 12227890

Neighbor

gene id symbol gene type direction distance location
LOC120558143 LOC104936998 coding downstream 22398 12197343 ~ 12201057 (-)
vstm2l LOC103354992 coding downstream 71768 12127992 ~ 12151687 (-)
LOC120557464 tgif1,LOC103375645,LOC108230274,LOC106534656,LOC107382471 coding downstream 308368 11908096 ~ 11915087 (-)
LOC120557460 LOC104959439 coding downstream 324608 11881185 ~ 11898847 (-)
zgc:123305 LOC103368761,LOC104959439 coding downstream 342949 11868137 ~ 11880506 (-)
LOC120558156 LOC103354990,LOC100702519,LOC102310094,LOC102789952,LOC102196994 coding upstream 25181 12253071 ~ 12260784 (-)
trnaq-uug NA coding upstream 104137 12332027 ~ 12332098 (-)
LOC120557556 LOC104937806,LOC103354984 coding upstream 212410 12440300 ~ 12446506 (-)
slc48a1b LOC103354983 coding upstream 228855 12456745 ~ 12463617 (-)
LOC120557863 NA coding upstream 237887 12465777 ~ 12470584 (-)
G37794 NA non-coding downstream 111451 12111104 ~ 12112004 (-)
G37679 LOC107098295,LOC108267514 non-coding downstream 249854 11870727 ~ 11973601 (-)
LOC120557710 NA non-coding downstream 443421 11763081 ~ 11780034 (-)
G37670 NA non-coding downstream 473082 11750032 ~ 11750373 (-)
LOC120557711 NA non-coding downstream 480005 11741570 ~ 11743450 (-)
G37812 krt18,LOC103386112,LOC107385534,LOC105931717 non-coding upstream 48981 12276871 ~ 12278670 (-)
G37813 NA non-coding upstream 55878 12283768 ~ 12286834 (-)
G37820 NA non-coding upstream 72343 12300233 ~ 12300493 (-)
G37822 NA non-coding upstream 95296 12323186 ~ 12373498 (-)
G37823 NA non-coding upstream 96589 12324479 ~ 12327427 (-)
G37805 LOC104936998,LOC103354991 other downstream 6265 12216203 ~ 12217190 (-)
G37799 tgm2,LOC103354993,LOC105931743,LOC107088490 other downstream 99003 12123445 ~ 12124452 (-)
dlgap4b LOC103354995,LOC104959427,LOC102311431,LOC102791764,LOC101471735,LOC103464946 other downstream 182455 11915867 ~ 12041000 (-)
LOC120557334 cytl1 other downstream 880302 11340758 ~ 11343153 (-)
G37432 LOC106915059,LOC106958204,LOC102221633,LOC103464975,LOC100700174,LOC101482873,LOC102210230 other downstream 1170370 11051299 ~ 11053085 (-)
G37861 NA other upstream 265039 12492929 ~ 12496235 (-)
G37876 NA other upstream 355545 12583435 ~ 12584453 (-)
LOC120557659 acap3,LOC103354975,LOC101487998 other upstream 372273 12600163 ~ 12660717 (-)
camk2n1 LOC104938800,LOC101487137,LOC105931744,LOC100700351,LOC104958030 other upstream 469787 12697677 ~ 12700619 (-)
LOC120557249 NA other upstream 511532 12739422 ~ 12745171 (-)

Expression


Co-expression Network