LOC120556668


Basic Information

Item Value
gene id LOC120556668
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 35676198 ~ 35689917 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638885.1
CATCATTGTAGTGTAAGTGATTGGCCTAACTCTCAAGTCCGAGCAAAACACctcaaataaaatacattaggTCAGGGATTTTTTCAATATGTGGTCCGGGTCCAACCCTGCAAGTCACAAAGAGGATTCCAGAGGGAGCTCCATGACAAAAATAAAAAGCCTGTAAACTGAAGCCAAGGAGGACTGTAGCTGAATGACCCATCGAGCTTCACTGGAACTTGAGGTCTCCTGTCCCCTCCTTACGCAACTTCGCTGGTGAGCCGTCTGCTGCACCTCACCTACCCAGCTGAATTCCCCAAGACCTAACCCAACCCTTCACACCTGCCACGCCATGAGGGAGCTACACTGCTGCACTCCTTACTTTGTtgtacaaagaaaaataaagcacCCACCTTAGTGGGTTTTCACTGCAA

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638885.1 True 413 lncRNA 0.48 2 35676198 35689917

Neighbor

gene id symbol gene type direction distance location
LOC120556919 NA coding upstream 156250 35517738 ~ 35519948 (+)
tp53rk tp53rk coding upstream 202872 35470994 ~ 35473326 (+)
LOC120557477 LOC103375199,LOC104930306,LOC101473264,LOC108251201 coding upstream 223879 35426361 ~ 35452319 (+)
LOC120558245 NA coding upstream 236059 35439977 ~ 35440139 (+)
LOC120556789 LOC104930304,LOC100703713,LOC103370810,LOC102215223 coding upstream 357029 35316477 ~ 35319169 (+)
sypl2a LOC103367888 coding downstream 492675 36182592 ~ 36210487 (+)
atxn7l2a atxn7l2,LOC103374593 coding downstream 526168 36216085 ~ 36242866 (+)
LOC120557073 LOC103374592,LOC100706250,LOC102300861,LOC101476702,LOC102207203,LOC102780650 coding downstream 553740 36243657 ~ 36249486 (+)
camk1ga LOC108240302,LOC103373651 coding downstream 612029 36301946 ~ 36327932 (+)
LOC120556721 NA coding downstream 676603 36366520 ~ 36368410 (+)
G43915 NA non-coding upstream 32084 35636801 ~ 35644114 (+)
G43896 helz2 non-coding upstream 82612 35591037 ~ 35593586 (+)
G43893 NA non-coding upstream 90792 35585201 ~ 35585406 (+)
LOC120556868 NA non-coding upstream 115310 35557651 ~ 35560888 (+)
G43877 NA non-coding upstream 134946 35540475 ~ 35541252 (+)
G43983 NA non-coding downstream 58139 35748056 ~ 35748334 (+)
G43999 LOC107698917 non-coding downstream 194102 35884019 ~ 35884249 (+)
G44001 NA non-coding downstream 202000 35891917 ~ 35892129 (+)
G44004 nfasc non-coding downstream 217160 35907077 ~ 35981369 (+)
G44028 NA non-coding downstream 462561 36152478 ~ 36152832 (+)
G43924 NA other upstream 10157 35664143 ~ 35666041 (+)
LOC120556915 NA other upstream 189963 35463772 ~ 35486235 (+)
G43656 NA other upstream 1009016 34665236 ~ 34667182 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 2330392 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 2339431 33262195 ~ 33336767 (+)
trnac-gca_18 NA other downstream 272622 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 1013338 36703255 ~ 36711295 (+)
plekha6 plekha6 other downstream 2270789 37960706 ~ 38096072 (+)
LOC120557027 NA other downstream 2476265 38166182 ~ 38174494 (+)
G44436 NA other downstream 2922720 38612637 ~ 38612971 (+)

Expression


Co-expression Network