LOC120557300


Basic Information

Item Value
gene id LOC120557300
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7242362 ~ 7258077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638954.1
GCCACGGAGGAGACCTCTGTCTTTGATGTGGATACCTCAGAGCCATCATCCGCTTCTTTGCCAAAGAGTTGCATGATACATGAACGGAACTgatgaggaaaaaataaaacgGCTACCTGACTCACACATTTGCCAAGAACTCCATGTGGGACAAGGACTGCACATCAAGAAGAGGATGGATCCTGAAACTAAAGAAATCTGGAGGACATCAACAGCTTTACGCAGGAGCCACGGAGGAGACCTCTGTCTTTGATGTGGATACCTCAGAGCCATCATCCGCTTCTTTGCCAAAGAGTTGCATGATACATGAACGGAACTAACGAAACACGAAATAAAACAGTATGTTACAAATTTAAACCAAA

Function

GO:

id name namespace
GO:0004112 cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638954.1 True 362 lncRNA 0.44 3 7242362 7258077

Neighbor

gene id symbol gene type direction distance location
LOC120557474 traip coding upstream 151610 7082265 ~ 7090752 (+)
sema3fb LOC103371090,LOC104933620 coding upstream 300750 6882145 ~ 6941612 (+)
arl8bb arl8b,arl8a,LOC107095653,LOC105934196,LOC106565753,LOC103355426 coding upstream 456095 6775726 ~ 6786267 (+)
LOC120556653 naaa coding upstream 472087 6767012 ~ 6770275 (+)
bhlhe40 bhlhe40,LOC104959416 coding upstream 481880 6756944 ~ 6760482 (+)
gata1a LOC100696076,LOC102798593,LOC101485806,LOC102310803 coding downstream 54657 7312734 ~ 7317082 (+)
mafbb mafb,LOC104945735 coding downstream 77389 7335466 ~ 7337312 (+)
si:ch211-232b12.5 LOC104939380,LOC103365892,LOC100697406,LOC102796719 coding downstream 103863 7361940 ~ 7377650 (+)
snai1a LOC104939346,LOC103358824,LOC108244374,LOC107385873 coding downstream 154712 7412789 ~ 7416280 (+)
myh7ba LOC103358826,LOC104966023,LOC101480568,LOC102289245 coding downstream 176133 7434210 ~ 7449018 (+)
LOC120557301 NA non-coding upstream 9892 7225630 ~ 7232470 (+)
G36450 tfe3,LOC103365907,LOC104939489 non-coding upstream 49872 7192016 ~ 7192490 (+)
G36431 mbd1 non-coding upstream 87867 7152803 ~ 7154495 (+)
G36426 NA non-coding upstream 93671 7147991 ~ 7148691 (+)
G36424 NA non-coding upstream 95312 7146117 ~ 7147050 (+)
G36469 NA non-coding downstream 14377 7272454 ~ 7272800 (+)
G36470 NA non-coding downstream 15004 7273081 ~ 7273879 (+)
LOC120557355 NA non-coding downstream 71218 7329295 ~ 7330628 (+)
G36485 NA non-coding downstream 99674 7357751 ~ 7359732 (+)
G36529 NA non-coding downstream 120618 7378695 ~ 7454262 (+)
si:dkey-245f22.3 NA other upstream 55148 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 603839 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 936219 6139463 ~ 6306143 (+)
prok2 prok2,LOC103355444 other upstream 1135210 6104613 ~ 6107152 (+)
rybpb rybp other upstream 1187146 6035072 ~ 6055216 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other downstream 30830 7288907 ~ 7306343 (+)
G36744 NA other downstream 969685 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 2502156 9760233 ~ 9856656 (+)
G37197 NA other downstream 3047110 10305187 ~ 10309996 (+)
glrx glrx other downstream 3129831 10387908 ~ 10396187 (+)

Expression


Co-expression Network