LOC120557393


Basic Information

Item Value
gene id LOC120557393
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18544155 ~ 18547192 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638964.1
GTCTGAAAGACCGCAGCAGCCGCactaaacaggaaacatcaagCTAAAAAGTGTGAACAATTCAGCCCATTTCATGCAGCGCAGGTCACCCTGATGACATGCCTGCAGCTCTCGATTTCTCCTGACATGCAAACAGATGCGTTCAAAGGTAAGTGTTGGCCAACAGATGAGCAAGTTCCACCATTCTACTCAAAGACTTCTGCAGCACTTAGTTTGCTTCACCTGTCTCGTATCTCTGTGCTGTTGTCCTTCCACTGTGTCATCGTCTTGTGAAGCATTCTGTGCAGGTACAGACAGTCTGAAGCCTTCCGTTTTTCCTCTTCTTCGATCTGCTGCTCTGTCCGTTGTCTCCAACGAGTCCAGGCTCTCTGTAAGTGGCAGCGCTCCTCGTGTAGAATTGCCTGACAACAGTGAGTTATCTGTCAGTATCTGATACAAACCTGCACTCAACATGCAGTAGTTTGTTTCCATTTATAGCTAACATACCATCCTCTCAGAAAGCATCTGCTCCTTGTGTTTCTCTGATTGTCCCCACCAGGTGTAAAACACCAAAGTGTACTGACGCTGCCTGATAACAGAGTGGTCAAACAAATCATGTGGAGGCAACAGACAGGTCAACTCTGCTTGGTCTGGAAATGAATCACAACACAAGTACAAATCGTGGGGTTGGTAACTAACCGGTTATAGACTTCTGCCTTGTGTCTTCTCTGTTTGTGGAGTCTTCTCTTCAGAGTGAACTCAACCCACGAGTCGAAACAACGAGGCAACACGCGTTCAGCAAACCAAATGTGTGCACGATGCTCCAATTTCtgcagaaaaacatgtttttgagtTTGCAATTAAACTATACTGGACAGGTACCCCTCATGTGTTTACCTacattttgaatacatttataaCTTTAATAAGTAAGtactgttgttgtattggatCTTAATACCAGCATGTGTCTCTGTTCAGCAAGTTTCTCTCTCCAGTGGTGAAAACAGCTGCTCAACAGGAATGATCTGTAAAGAGAACAACAAGTCCACATTTATATCCAAATCACGCAAAAAGGAACAACTTCATATGAAATATGCAACATGTTTGTAGCTTTGATGCTAAAAAATAAAGCaatcaatatatttttctctgtaGGGCAAACATGTAAATAAAAGCACCTGTGGTTAGTCAGTGCCATTTCTGTTAGGGGTTGAAAACTCTCGTCTTCAGCCTCCTCCAGACGGTCCTGCCACAGCTTCCAGTACTTACATGCCAtctaagaaaaacaaaagcattgaATGTTTAGAAACGTTACTTAACGTAGGTTACTGACTCTGTAATATCAGGATGATAGAACGCTCATCAATTACAGTTTGATGATAATGTTGGACAGCCATGTTGTTGTTCAGTCGGTGCGTTTTGTTCCCGATGACGTTAAGAGAAAGTCCCATCAGTCCAGCATGCTGCAACAAGAACACACAGTGATCAATACATTAAATGGCTGCACGCTCTACTTACATGCAGTTGCTTAATTTACTCTTCATCTTACCagtaaatgatgatgatga

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638964.1 True 1550 lncRNA 0.43 2 18544155 18547192

Neighbor

gene id symbol gene type direction distance location
c4h1orf74 LOC104948860 coding upstream 20115 18523155 ~ 18524040 (+)
tomm6 NA coding upstream 21069 18521759 ~ 18523086 (+)
tspo tspo coding upstream 26444 18515298 ~ 18517711 (+)
ppil1 ppil1,LOC102783931 coding upstream 115557 18424507 ~ 18428598 (+)
si:ch211-157b11.14 NA coding upstream 152499 18384593 ~ 18391656 (+)
eif4enif1 eif4enif1 coding downstream 2784 18549976 ~ 18564635 (+)
patz1 patz1 coding downstream 18709 18565901 ~ 18579863 (+)
tgfa tgfa,LOC102305789,LOC107385163 coding downstream 45972 18593164 ~ 18598375 (+)
trub2 trub2,LOC102777509 coding downstream 64431 18611623 ~ 18615957 (+)
LOC120556859 NA coding downstream 92667 18639859 ~ 18645117 (+)
G39861 NA non-coding upstream 91655 18448847 ~ 18452500 (+)
G39665 NA non-coding upstream 690789 17852516 ~ 17853366 (+)
G39654 NA non-coding upstream 758345 17785259 ~ 17785810 (+)
G39638 NA non-coding upstream 808249 17735486 ~ 17735906 (+)
G39633 NA non-coding upstream 821807 17715412 ~ 17722348 (+)
G39925 NA non-coding downstream 23399 18570591 ~ 18570983 (+)
G39926 NA non-coding downstream 26490 18573682 ~ 18573909 (+)
G39927 NA non-coding downstream 26790 18573982 ~ 18574211 (+)
G39934 NA non-coding downstream 51832 18599024 ~ 18599229 (+)
G39935 NA non-coding downstream 54524 18601716 ~ 18603100 (+)
LOC120557740 acy1 other upstream 317577 18215706 ~ 18226578 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other upstream 349244 18189582 ~ 18194911 (+)
wnk2 wnk2,LOC104946158 other upstream 614037 17904698 ~ 17930118 (+)
LOC120556838 NA other upstream 810144 17720441 ~ 17734011 (+)
G39581 LOC104949003,LOC103357913 other upstream 934939 17607930 ~ 17609216 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 749067 19296259 ~ 19314826 (+)
G40164 LOC103360294,LOC104965627,LOC100702547 other downstream 777637 19324829 ~ 19326625 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 877674 19424866 ~ 19426456 (+)
slc38a3b LOC103360384 other downstream 894816 19442008 ~ 19470998 (+)
LOC120557344 LOC104966310 other downstream 1069989 19617181 ~ 19632519 (+)

Expression


Co-expression Network