LOC120557469


Basic Information

Item Value
gene id LOC120557469
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 28993466 ~ 28996272 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638971.1
taatttgtattctgaatacgtaacgccgttacatgtattccgttactccccaacactgcgaGTCAATTAGCACCCCAAGATATTTAAATTCACTCACAACCTGTAATTTTGCACCCTCAACAATTATGTGATGATCACTTGTGGATCTATTGGTTTTGCAAAAGAACATGCTAACTGTTTTAGAGACATTTAGTTGCAGGCAGCACTCTTGTAACCATGTTGTAACCTGAgccatggatctggtgagcataGCTGCAACGTCTGCTTTGGATCTGCCATGTACAAATTAAATAGTATCATCTGCGTACATTATGGTTTCAACCTCAGGACAAACAGATGGAAGGTCATTAATACATATACTAAACAAGAGCGGACCAAGAATGGATCCTTGTGGGACACCAGTAGGCTCCACCTCCTTAGAAGGGCGGGGCTTACAAGGTCCAGCAAGTGACCCAGAGTTCGGATGAGTTTTCACACCAGCCCAAACGAACCGGACTATCCGACCAAACGCTCCAGGGTTCGTTTTAAAAACaagGACCACCAGCACCTGTCCCTCAGAGAAGCTCAGCTCATCGTGGTGGTCAGCCTGGCAGTCGTACAGCGCCTCAACCCGGCGGCTCGTCGCACCCCGAGGCTAATAGACATAAGCAAATCACGCTGAAAAATGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638971.1 True 670 lncRNA 0.46 3 28993466 28996272

Neighbor

gene id symbol gene type direction distance location
st3gal8 NA coding upstream 6878 28950477 ~ 28986588 (+)
LOC120557450 NA coding upstream 44139 28925722 ~ 28949327 (+)
rem1 rem1 coding upstream 77818 28904998 ~ 28915648 (+)
pnp4a LOC103367714,LOC101478937,LOC106510859 coding upstream 102106 28884576 ~ 28891360 (+)
LOC120557430 LOC104950703 coding upstream 137733 28837250 ~ 28855733 (+)
c4h6orf89 clg5h6orf89,LOC103369827,LOC104961369,LOC104933301,LOC101474837,LOC102304616 coding downstream 204568 29200840 ~ 29207769 (+)
LOC120557724 cenpp,LOC104951285 coding downstream 488895 29485167 ~ 29595866 (+)
zgc:153675 LOC104941726,LOC100706129,LOC106954467,LOC103130791,LOC107080719,LOC105920322,LOC101469258,LOC103464637 coding downstream 633827 29630099 ~ 29636640 (+)
hgh1 hgh1 coding downstream 643334 29639606 ~ 29657185 (+)
nisch NA coding downstream 674197 29670469 ~ 29717340 (+)
G42365 NA non-coding upstream 73183 28919660 ~ 28920283 (+)
G42362 NA non-coding upstream 75271 28917635 ~ 28918195 (+)
G42355 NA non-coding upstream 93341 28899827 ~ 28900125 (+)
G42345 NA non-coding upstream 112152 28880844 ~ 28881314 (+)
LOC120557449 NA non-coding upstream 156562 28830608 ~ 28836904 (+)
G42403 NA non-coding downstream 80692 29076964 ~ 29077256 (+)
G42425 NA non-coding downstream 187866 29184138 ~ 29185612 (+)
G42427 NA non-coding downstream 189508 29185780 ~ 29186375 (+)
G42428 NA non-coding downstream 190161 29186433 ~ 29186921 (+)
G42426 NA non-coding downstream 190702 29186974 ~ 29187714 (+)
ephb2b LOC104917933,LOC103376520 other upstream 1170206 27670963 ~ 27823260 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other upstream 2228729 26652851 ~ 26764737 (+)
G41850 rps10,LOC102793608 other upstream 2444667 26542507 ~ 26548799 (+)
G41825 NA other upstream 2720151 26268602 ~ 26273315 (+)
LOC120558088 LOC104941431 other upstream 3085728 25904769 ~ 25907738 (+)
G42449 NA other downstream 244141 29240413 ~ 29242253 (+)
ergic3 ergic3,LOC102788871 other downstream 1113263 30109535 ~ 30135834 (+)
G43045 NA other downstream 3463860 32460132 ~ 32460863 (+)
G43051 LOC102201960 other downstream 3474523 32470795 ~ 32471605 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other downstream 4041662 33037934 ~ 33041311 (+)

Expression


Co-expression Network