LOC120557758


Basic Information

Item Value
gene id LOC120557758
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24452621 ~ 24454019 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639015.1
CTTCCCAGTTCACAGGCAACAATGGGGCGTCTGAGTTTCTCCTGGCTCAAGGCACAGTATTTCCACTGGGCAGCCAACTCTGCATTTTTATCAACCTGGAGACATGATAAGGCTGCATATTAGTTTACTATCGATGGCGCTGTCCAAGAGCGACCATTAGTTTGGGGAATACCTCAGTGGAGACATCTCTGGCGGCATGACTGATAATCTGTTTGGAAAAGAAGACTGCTGTAAGAATGAAAACACAGCATTGGACTTCATTTTGGCTGAGAAAATAGATTTCAACCTCTTTACGCTCACCACACACTGCTGCTACTGTGGTTCCCAAAATGTAGCAAAattaacaaatataaacataaaaatatttctCCATTT

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639015.1 True 375 lncRNA 0.42 2 24452621 24454019

Neighbor

gene id symbol gene type direction distance location
gcnt7 gcnt7,LOC102795321,LOC102207891 coding upstream 3252 24441312 ~ 24449369 (+)
LOC120558070 cdh22 coding upstream 286802 23972393 ~ 24165819 (+)
rbck1 rbck1 coding upstream 616653 23825726 ~ 23835968 (+)
tox2 tox2,LOC104948894,LOC108231505 coding upstream 787008 23571602 ~ 23665613 (+)
LOC120557289 wnt2b,LOC104945808 coding upstream 947916 23493752 ~ 23504705 (+)
eya2 eya2,LOC103355465,LOC102207428 coding downstream 36840 24490859 ~ 24521308 (+)
rdh5 rdh5,LOC104964277 coding downstream 107686 24561705 ~ 24567422 (+)
gls2b LOC103355460,LOC104964278 coding downstream 114472 24568491 ~ 24583147 (+)
asic1b asic1,LOC104953473,LOC102798299 coding downstream 169473 24623492 ~ 24822313 (+)
smarcd1 smarcd1 coding downstream 373787 24827806 ~ 24858457 (+)
G41360 NA non-coding upstream 1052 24436382 ~ 24451569 (+)
G41354 NA non-coding upstream 30738 24419201 ~ 24421883 (+)
G41346 NA non-coding upstream 175711 24276060 ~ 24276910 (+)
LOC120556870 NA non-coding upstream 582037 23868371 ~ 23870584 (+)
G41308 NA non-coding upstream 604683 23846793 ~ 23847938 (+)
G41368 NA non-coding downstream 67580 24521599 ~ 24523607 (+)
G41375 itch,LOC104964281,LOC107681287,LOC101070007,LOC108231686,LOC103355463 non-coding downstream 86890 24540909 ~ 24542153 (+)
G41441 NA non-coding downstream 467617 24921636 ~ 24921851 (+)
G41518 NA non-coding downstream 568439 25022458 ~ 25022749 (+)
LOC120557911 NA non-coding downstream 598817 25052836 ~ 25065136 (+)
znfx1 NA other upstream 585109 23848047 ~ 23867512 (+)
cbfa2t2 cbfa2t2 other upstream 680689 23734948 ~ 23771932 (+)
itga7 itga7 other upstream 2460010 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 3108910 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 4303931 20148104 ~ 20148690 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 101506 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 754137 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 1228388 25682407 ~ 25690935 (+)
LOC120558082 kcna10,LOC104941363 other downstream 1313073 25767092 ~ 25872919 (+)
LOC120558088 LOC104941431 other downstream 1450750 25904769 ~ 25907738 (+)

Expression


Co-expression Network