LOC120557914


Basic Information

Item Value
gene id LOC120557914
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30410280 ~ 30412400 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639035.1
AAGTCCTACAATTTCCAAAGGACTTGAACGCAGCGTCAACAAGGAAACGAAACGTTACTGCGGCCCCCCAACAAGCATCAAACTGAAGAAGTTAGCATTACTACAGTCAGCTGCCCGGTGAGTTCCTTGGTACAGCACCCCTCCGCACAAAACCCCCGCAAAGGCAGAGGAAAGCCGCGTGGCTCCAAACGACCAGGAGAAAATAAGTATTATTAACTTCCACAGAGTAATGTCAGTATTAACAACGTTACAGATAGTTTCAGGTAGTCGCTAGTCGTTTCGACCAAGTCATCTGTGTCGTGACGAGGAGGGCTTCCTCGCTGTGTTGATTTCTTTCAGAACCGGCAGCCGATAACGGTTAAACAAGTGGAGATGCCTCAAAAACAGAGGTCCAAGACCTGGACGGAGCTGAAACAAGCTGGAAATGAATGTTTCAAGACGGGCCAGTATGGAGAGGCCACCAATATTTACAGCCAGGCAATCAAAGAGCTGGAGAAGTCCA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639035.1 True 502 lncRNA 0.48 2 30410280 30412400

Neighbor

gene id symbol gene type direction distance location
LOC120557913 NA coding upstream 2435 30389010 ~ 30407845 (+)
LOC120557912 NA coding upstream 32384 30354966 ~ 30377896 (+)
mych LOC103358868 coding upstream 211378 30194639 ~ 30198902 (+)
hesx1 NA coding upstream 303795 30102902 ~ 30106485 (+)
LOC120558110 LOC103358872,LOC102788290,LOC106565051,LOC100694607 coding upstream 312047 30092167 ~ 30098233 (+)
tomm34 tomm34,LOC102784590 coding downstream 16607 30429007 ~ 30442999 (+)
abraa LOC103364886,LOC100691009,LOC101485260 coding downstream 92294 30504694 ~ 30513488 (+)
lsm3 lsm3,LOC100705055 coding downstream 266916 30679316 ~ 30685535 (+)
LOC120558103 slc6a6,LOC103364884 coding downstream 409281 30821681 ~ 30873506 (+)
zgc:171566 ggh,LOC108243634,LOC102781709,LOC100692082,LOC107384984 coding downstream 965580 31377980 ~ 31417492 (+)
G42772 NA non-coding upstream 68211 30341730 ~ 30342069 (+)
G42770 NA non-coding upstream 71239 30337411 ~ 30339041 (+)
G42766 NA non-coding upstream 75465 30334224 ~ 30334815 (+)
G42755 NA non-coding upstream 77545 30318179 ~ 30332735 (+)
G42752 NA non-coding upstream 98238 30311595 ~ 30312042 (+)
G42792 NA non-coding downstream 79200 30491600 ~ 30491841 (+)
G42793 rims4 non-coding downstream 105862 30518262 ~ 30528346 (+)
G42797 NA non-coding downstream 179543 30591943 ~ 30592595 (+)
G42836 NA non-coding downstream 261427 30673827 ~ 30677017 (+)
G42870 NA non-coding downstream 397429 30809829 ~ 30810064 (+)
ergic3 ergic3,LOC102788871 other upstream 274446 30109535 ~ 30135834 (+)
G42449 NA other upstream 1168027 29240413 ~ 29242253 (+)
ephb2b LOC104917933,LOC103376520 other upstream 2587020 27670963 ~ 27823260 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other upstream 3645543 26652851 ~ 26764737 (+)
G41850 rps10,LOC102793608 other upstream 3861481 26542507 ~ 26548799 (+)
G43045 NA other downstream 2047732 32460132 ~ 32460863 (+)
G43051 LOC102201960 other downstream 2058395 32470795 ~ 32471605 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other downstream 2625534 33037934 ~ 33041311 (+)
G43277 NA other downstream 2775338 33187738 ~ 33212318 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other downstream 2849795 33262195 ~ 33336767 (+)

Expression


Co-expression Network