G45931


Basic Information

Item Value
gene id G45931
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 225945 ~ 229546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU61494
tacatatgaaaaaacaagTTTATTTATTGTTAGCAACCCAAACGCATTTTCTTAGGGCGTTAATGTtacacagtatataatggaATCAATTGAATGTAATATCTTTGGTTGTGTCCTCAGTTGGAGATCAAACTATAATCCAACATGTGTCCCAGGAAACTGTCAGACTAGCCTGAAGGGaaaatgacacaaaacacaaaaaggatTAGTTATAAATAACTAGTAATTTAGTGTGACTTGTATTTATGCATATGTTGTGTCATGCAGTGTTCATTACATCCCACAATGAGAGACAGTACCAACAGAGCTGTAGTCAGGAAGTGGTTaccctagcttagcataaaggctGGAGGCAGGggtaaacagctagcctgccgctttgcaaaataaaaaaatacacctaCCAACACCTCTAAAACCTAATGATGAATGTGCAGAAATTGTATAATGGCAATTTATGGTTTTAGGGGGAGTAACATGATGAGAACAACTTGTTAACTAAAAACAAGAGGATATTTAAAATTGATGGTGAGGTAAGGTCAGGACTTCACCGCAGTGCCACACAAaatcatcctctggggaccatgaataacCAGAGTTCTATGATTGCATGTATAGTCAAAATTCATGTTGTCTCTTCCAATGACCACCAAACCAGCACAAGCTTTTGACCACTATGCTTCAGTATATTTGATCAAAATCCTAATTGGATTTCCTTCTGCCATCTTCAGCTGCAGTCTTACCTCTTCCACTGTTGCATCCCAGACCGCTGGCATTTCCTATTCGATCCATCCTGGCTCCAAAGCAGCCAGAGGCCCGTTTCCTGGCTGTCATCAGGAGGTCCAGCAGACGGCTCCTTTGACTTGCGGTCCTGCTGTGGCCCTCAGCTGGTAATTGAGATCTTTCTGACATTAAAGGTTCTTGGTCCCCCTCCTGGTCTTGGTTCCAACCCTGGCTGGCCTGGCTGTTCTCAGGCTGTTGATTTGTCCCTTCATAATCAGCTTCAGCGTCCTCCTCCTGGGCTGCATCAGCAAGAGTCTCCTCAAAGCGCTCCAGTATACTTGAGCTGAGCCAGGTCCCTAGTTGAAGAGGTCCTACCCAGTATGTGGCTGCTAACCAGTGTGTGCTGACACAGCAGGGCCAGCAGGCCCCACAGGACCGCAGTCCTCATGTTATCCTTTTGCTGCGAATACTGATACTACAGGCTGCACTGCAAGATTTTATATacatgccaa

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU61494 True 1235 lncRNA 0.44 2 225945 229546

Neighbor

gene id symbol gene type direction distance location
vps13d vps13d coding upstream 16208 74750 ~ 209737 (+)
LOC120558443 LOC104919493 coding upstream 159890 63849 ~ 66055 (+)
commd7 commd7,LOC102794680 coding downstream 246918 476464 ~ 485895 (+)
LOC120558328 nol4l,LOC103385166,LOC103361530 coding downstream 328671 558217 ~ 771056 (+)
zgc:194282 srms,LOC103385165 coding downstream 553245 782791 ~ 821180 (+)
ptk6b NA coding downstream 595709 825255 ~ 847622 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding downstream 709430 938976 ~ 986271 (+)
G45943 NA non-coding upstream 2714 222544 ~ 223231 (+)
G46011 NA non-coding downstream 93697 323243 ~ 330408 (+)
G46013 mapre1 non-coding downstream 102697 332243 ~ 340678 (+)
G46014 mapre1 non-coding downstream 129276 358822 ~ 365267 (+)
LOC120559841 NA non-coding downstream 145550 375096 ~ 376473 (+)
G46042 NA non-coding downstream 271803 501349 ~ 501559 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other downstream 564356 793902 ~ 900296 (+)
LOC120559832 rps21 other downstream 1006769 1236315 ~ 1247771 (+)
G46238 NA other downstream 1047742 1277288 ~ 1284379 (+)
G46305 NA other downstream 1293139 1522685 ~ 1523231 (+)
G46328 NA other downstream 1406402 1635948 ~ 1638170 (+)

Expression


Co-expression Network