G46011


Basic Information

Item Value
gene id G46011
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 323243 ~ 330408 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU61593
ACTGGTTTTTATTGTCTGTACCAAACTTGACTGAAGAAAATGGAGTTTTCCAGAGTATAACAAACACATCAAAGTCCAGCATAAACAGGAGACAAAAAGGAGACTCACAGTGTTCACGCTCATCAGCACTGATTTTTGAGAGGGAAAAGCGCAGAGGTCACACAAGCACCACCGTTACCTTTGAAGCCATCATTTCACTTTGCTCTGACAttttcagcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgatgctGCACCTCTTCAGCCAAACTGGGACAGAAGTCCTGATGGCTCagttaaaggcacagtttctgaatacaggctgtttgatactttcacaatatttatatagcaccttgacctgctttataataataataataataataataaaaaaagagacatggaaatggttttgttttgttttttacaatttgggacctttaaactcttAGTGGAGATAAAAGTTACAGAtcccccaaatggccaaaactTTCTGAGCATGATCTCTGTCAAGCGTGTGTGACTGAAACCAGTCCAAAGTTTGATATCAAACACCACACCCAGTCCTCCTCagtaacacttacaataacccatattacaacCGTCATAAAACCAGACCCGACACAACTGAAGATCTCGTTATGTTACGAGTCACACCTGACCGGTAATTGAAGTGACGACAGTTGGTATTAAGATTCAATAAATACACACCGTTAGGGAGCTAGATGAGGAAGCTAACATTGGCACTGGGTCCAGTACAGAGGCCACCACGTAAAGGGGGACGTTGGCTCCCTCTTGCATAACGGAAAGCACTTCTTCACTAAGGTTCGACACCAGTCCTCAGAACTGCTCAAAATGTTTGTCTACAGTTTCAAGTGTTTGAGTTTGCCTCCCAGTTTAGAGAGAGACCTCAGTGCGCTACAGTTTGTCTGAACACACAGGAATGGTATTCCACTGAAGAAATGTCAAACTACAGGATAGCTTTAGGAAACGGGAGTTTCAAAGTGCTCACATGTGAATTGTATAACATAAAGTCCAGCCTTAGCAGTATTGTGCTTTAATTAATTTAGAGCATTTATTTTAATCTGATTAGAAAAGTTTAACCACTATCAATTTGACTTTCCACTATGTAGCTTGCATTTAAGTTTTCATTGTACATATTTGGGAAGTAATCAACTATTTTTATAATCAAGGTATCGTTTCAGTACGGAAGCCCTTAGAAGCAAAGCACATTTTTCTCATAATCCATCTTCTAAGTCTGATCTAAATTGTTTTCATTCCTATGATTATGACATAAGAAAAGGTGGCAGGATCATCTTTCaaagtttctttaaaaatgttataTTCATTACAGCCATAAGAGGGTGAAAAACCCGTGTTTGCGCCGATTAAAATACATTTCCGTAATAGTATAGTAATACTGTAGGTGTAGCTCTTTCTGTATAAGGTGTACAGTATAAAGTTTCTTTTTATGTAATGGTTAAAACTTCTTTTTCTGTAACATAACAGGATGTCGGGGAGGGATGCCAGAGTCTCCGCagggccttaaaaagtcttatatTCACTGAAGTATAGTGTAGTATATACTAAGTCTAAAATTAATAATTTCCTACATCCTTGTAacactacctctaatgctctttgaaatgtttttttgttctttattctggggtgttgtagttctttcattcatccaaatataatttgctatAAATACAGATTATTATTACTCTGCGTCGCTTTTATTCAATATTCGCTTTGAATACACTCATTTACTTTAAGTACGTTTGTGACTCTGCGTTTTCGTTGTATTTTTAGGTCGTGATACAAGtgttaaatttcattcataaaaaggtcttaaaaagtcttaaatgtgACTTGGTGCAGAGAGCCCGGGTTGGTTGAGGGCTGGGTGGGGGGCTGTTTTGTTGGTTAAATACCaataaaaaaacttcaaaaatacaTGTCTAGCCAAAATATAGACATGACACATAGTTCCTGGTACAGCTAGTGATTTCCACTATTCACACACGCAGGCAACGCCAGGAACCCATCAGAGACAGCCCAACAAGGACCATCCCTGCAATGTTCCTGCTTGCATTCACAATGAAGCCATCCCAGCATTTTAAATGGGATGTTACGAGGTCCTGAGGGGGGAACTTGGCAGTACAGATTCACCCTGCCCCCCTCATGCAGGAAACCTCTTGTTTTAGGGAAAGACTGCATGTGTGAAATGAGTGTTATAACAACAATCACTTCATCTTAACAAATATGAAATAATTCAGCTGGTAAAACCTGTTTTCACCTGTTCTGTAGTCATaaacaggagagaaaacaaTTAAGATCAGAGTTATGGAATGACTCATCAAAAGAAGAACATTCTTACTTGCCTCTCACAGCTTCCCTATTTGAGTCAACTaagcaaaaatggcaaaaataaaaatcctgatttcagcataaaaaaaacatgaggatTTGTGGTTTTTCTTGGTTtaaaaatcaactaaaatattaacccaaatatctttgggttttggactgttggttaaattaaaaaaaagatactttCTGATCCGAGAGATTATGTTtaaactattttgaaaatttGAGAATAGTCAGCAGATTCATCAATAAAGGCTATGTTCATTAGTTAGAGGACCTTAGTTAGTAAATGTTCATGGGACCAAAGAGAATGATGACAGTAAGGAGCAGTTGGTTGTGTTGCCACAAATTATATAAGCACATTAGATCCAAAAATAAAAGGAACTGCAGAAACGTCCTGACTTGcactttaaccctcatgccctcttcggtcatttttgtacatttttctcaagttttttttttcatttcgtgataatttttgctgtgttacttcttatggcatgaaattttgtaggaatccttcttttcagtcaaattttttaaatccattgtTTTTTAcgcttacatgtcttttatacttaaatgattcattttgtaccctctggacaccttcgaggcaaaaatgtccacgcacacaaaaacttaTTCAATCATATATCactatttttttctgcatttcttttcataaatcacttaaccaacttctaacctaatcaaaaccaccaaacattcaatcattttcaggattgtaaccctttaaatgccagtttatgtatatgaagtatgtcatttataaaaaaaaaaaaaaaaaaacacactaaaaaatgtttctttcccatataatgaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61593 True 3361 lncRNA 0.37 2 323243 330408

Neighbor

gene id symbol gene type direction distance location
vps13d vps13d coding upstream 113506 74750 ~ 209737 (+)
LOC120558443 LOC104919493 coding upstream 257188 63849 ~ 66055 (+)
commd7 commd7,LOC102794680 coding downstream 146056 476464 ~ 485895 (+)
LOC120558328 nol4l,LOC103385166,LOC103361530 coding downstream 227809 558217 ~ 771056 (+)
zgc:194282 srms,LOC103385165 coding downstream 452383 782791 ~ 821180 (+)
ptk6b NA coding downstream 494847 825255 ~ 847622 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding downstream 608568 938976 ~ 986271 (+)
G45931 NA non-coding upstream 93697 225945 ~ 229546 (+)
G45943 NA non-coding upstream 100012 222544 ~ 223231 (+)
G46013 mapre1 non-coding downstream 1835 332243 ~ 340678 (+)
G46014 mapre1 non-coding downstream 28414 358822 ~ 365267 (+)
LOC120559841 NA non-coding downstream 44688 375096 ~ 376473 (+)
G46042 NA non-coding downstream 170941 501349 ~ 501559 (+)
G46078 NA non-coding downstream 531783 862191 ~ 871239 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other downstream 463494 793902 ~ 900296 (+)
LOC120559832 rps21 other downstream 905907 1236315 ~ 1247771 (+)
G46238 NA other downstream 946880 1277288 ~ 1284379 (+)
G46305 NA other downstream 1192277 1522685 ~ 1523231 (+)
G46328 NA other downstream 1305540 1635948 ~ 1638170 (+)

Expression


Co-expression Network