XLOC_005109



Basic Information


Item Value
gene id XLOC_005109
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4231857 ~ 4232505 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00011075
GGATATCAGGGATGCTGTTCGAAGACTGTCCCGTGTCAGTGAGACTCAGGCAGGGTTGAACTGCAGCACCTGGAGGCTGCCTTGAAGAGCCTTGTGAATGAGAGCCATTCTGACGCTCCCCCAAAAAGCAGAGCTTCTCCAAAGCTTGAGGACCGTCTCTGGACTCTGCATTGGTGCTGGTGTCTGAAACTCTGATGCCGGTGTTCAGGGCTGACTGTTTGTTCATGAAGGGCTCCAGCGGCAACAGCTGGACGTGAGTGTTGGGCTTTGAATGGGTTGGCATGTGTGCAAATCCAGGATTGTTCAGTTCTGGGGGAGGTTGATGGGTTTTGTGTGAAGATGTTCCTGTCCAGTTTTCAAGACCCGTGAACACTGTTCCAACAAACTGTGATTTTAATATGTTGTTTTTGGCAAAGGCACATGGGGCTGTTACCATACCTAAGCCTCCAACACTTCCAACTCCTGCAACAATACCAACGTCTCCATTCTGAGCTTGACCCAAAGGGACAGCAACTGTGGCGGTTTGAAAACCTGTGCTTTGTTGGGCTGTTTTGGCAGCACTGATTCCCCCCCATTGgagtttgt

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00011075 True 585 lncRNA 0.51 2 4231857 4232505

Neighbor


gene id symbol gene type direction distance location
XLOC_005108 vkorc1 coding downstream 11144 4217178 ~ 4220713 (-)
XLOC_005107 si:dkey-32n7.9 coding downstream 24988 4201826 ~ 4206869 (-)
XLOC_005106 si:dkey-32n7.8 coding downstream 32129 4196493 ~ 4199728 (-)
XLOC_005105 NA coding downstream 37553 4190022 ~ 4194304 (-)
XLOC_005104 si:dkey-32n7.7 coding downstream 46303 4170921 ~ 4185554 (-)
XLOC_005110 zgc:92313 coding upstream 8953 4241458 ~ 4249000 (-)
XLOC_005111 NA coding upstream 42405 4274910 ~ 4287034 (-)
XLOC_005112 CU571308.1 coding upstream 53861 4286366 ~ 4286480 (-)
XLOC_005113 ca15b coding upstream 62418 4294923 ~ 4301376 (-)
XLOC_005114 zgc:153760 coding upstream 76017 4308522 ~ 4317165 (-)
XLOC_005103 NA non-coding downstream 62158 4143594 ~ 4169699 (-)
XLOC_005102 NA non-coding downstream 102037 4089737 ~ 4129820 (-)
XLOC_005094 NA non-coding downstream 366623 3860464 ~ 3865234 (-)
XLOC_005092 NA non-coding downstream 445475 3782621 ~ 3786382 (-)
XLOC_005126 NA non-coding upstream 444681 4677186 ~ 4683350 (-)
XLOC_005128 NA non-coding upstream 584784 4817289 ~ 4817860 (-)
XLOC_005131 NA non-coding upstream 637496 4870001 ~ 4871916 (-)

Expression



Co-expression Network