Fish Transcriptome and Expression Database

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model fish

XLOC_005112 (CU571308.1)

Basic Information

Item	Value
gene id	XLOC_005112
gene name	CU571308.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007123.7
NCBI id	CM002896.2
chromosome length	49182954
location	4286366 ~ 4286480 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009912
gCTGAcagttagctctctgcaactcttgcATGGTcatccactgaagctaagcagaatTGTGCCCGATCAgtccctggatgggagaccaaatgggaaagctaggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113717

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00009912	True	115	rRNA	0.52	1	4286366	4286480

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_005110	zgc:92313	coding	downstream	37366	4241458 ~ 4249000 (-)
XLOC_005109	NA	coding	downstream	53861	4231857 ~ 4232505 (-)
XLOC_005108	vkorc1	coding	downstream	65653	4217178 ~ 4220713 (-)
XLOC_005107	si:dkey-32n7.9	coding	downstream	79497	4201826 ~ 4206869 (-)
XLOC_005106	si:dkey-32n7.8	coding	downstream	86638	4196493 ~ 4199728 (-)
XLOC_005113	ca15b	coding	upstream	8443	4294923 ~ 4301376 (-)
XLOC_005114	zgc:153760	coding	upstream	22042	4308522 ~ 4317165 (-)
XLOC_005115	ca15a	coding	upstream	33561	4320041 ~ 4331117 (-)
XLOC_005116	ca15c	coding	upstream	51818	4338298 ~ 4346085 (-)
XLOC_005117	si:ch211-173d10.4	coding	upstream	74337	4360817 ~ 4370585 (-)
XLOC_005105	NA	non-coding	downstream	92062	4190022 ~ 4194304 (-)
XLOC_005103	NA	non-coding	downstream	116667	4143594 ~ 4169699 (-)
XLOC_005102	NA	non-coding	downstream	156546	4089737 ~ 4129820 (-)
XLOC_005094	NA	non-coding	downstream	421132	3860464 ~ 3865234 (-)
XLOC_005126	NA	non-coding	upstream	390706	4677186 ~ 4683350 (-)
XLOC_005128	NA	non-coding	upstream	530809	4817289 ~ 4817860 (-)
XLOC_005131	NA	non-coding	upstream	583521	4870001 ~ 4871916 (-)
XLOC_005132	NA	non-coding	upstream	585561	4872041 ~ 4874669 (-)
XLOC_005134	NA	non-coding	upstream	674471	4960951 ~ 4963242 (-)

Expression

Co-expression Network