XLOC_005113 (ca15b)


Basic Information

Item Value
gene id XLOC_005113
gene name ca15b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4294923 ~ 4301376 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009913
GTTAAGGAGAGGAAATTAGGTGTGATCGTTAAAAACTGAAAAGGTTTAAGCATTAAAAATGATGACTGTAATCCTAACCTGTCTTGCAACTTATTTCCTGCACATGGTGTGCAGTGTTTCAGGCTCCATTTCATGGTGCTATCACAGTCCATCATGCAGTGAAGTCACATGGCCCATCATTGCAGAAAAACACTGTAACGGCACTCAACAATCTCCAATAAACATCGTAACCGCTAATGTCAAGGCTAATGCTAATTTGACCTCTTTCACATACGTTGGCTACAATGACAGCACTGCTTTAACTGTGATTAAAAACACTGGCACAAGTATTCAAGTTACGTTGGATCCGAAGAAGATGCGTGTGGCAGGGGGTAATCTGCCAGGCCGGTTTGCCAGCACTGAGTTTCATCTTCACTGGGGAAATGGCAGTGCCATGCCTGGGTCTGAACACACTGTGAATGGAAAACGATTCCCAATGGAGTTGCATATTGTGAACAAGCCTGTCAGTAACACCAGTGATTCGTTGGCAGTTCTTGGTGTCTTCATTGAGGCCTCTAATGAAACTGGGAAACCTGAGAGCTGGAAGACTTTAACGTCGTATCTTACAAGGATTGTCAAAGCAGGTGATAAAGCAAGCCTTTTCAGAAACTTCTCCATGGATGATCTGCTTTCTGGAGTGGACAGGACAAAATACTACCGGTATTTGGGCTCCTTGACCACACCAAACTGCAATGAAGGTGTGATCTGGACCGTCTTCAAAGACCCAATTAGAGTCAGCAGGGATTTGATTGATCTCTTCAGTACAACGGTCTACATCAACAACTCCAGCAACTCTCCTCTAATGACCAACATTTTTAGATCCGTTCAGCCAGTCAATGGCAGGATTGTGATGTCACAGGTAGCAGGTACCAAAACTCCTGGGCTTCTAAATCCAACATCCATTGCAGCAAATCTATCCCCGTCTCTGATGTACCCTATCCTGAGTCTCACATTCTTGTACTGCGTGCTGGCTTTCTTGTAGAACCACTCTGCTCCACGAAATggagggataaaaaaaaaacatttacactatttaatatattactatgtTTGTTAACATGTCACTTGTCTTTTAATGTCAGTAGAGCTGGTTGAATGTATATTAATGTTGTCATGGAAAGTTTTGTGTTATTTGGTAATTTGTTAGTTCATTGCTCGACTCATTTTCTGCTGCAGTTTTGTAAAAGGACGACAAATGGCGGTTTTATTCCACGATTGAGTGCTAAAGTTCTTGAAGATGTAGTTTTAGTGATGGTGGTTTTTAGACATTTGATTTGTATGTGTGGgcttttaatgttgtttaatggACTCTTAACATTTTTATTGCATGCTTTTGCAGTTtgaagtggtgtgtgtgtggggtggtGGTTTTGGTATTTGACAATTTGGGCAACATGATTTATTCACTTTCTCAGAACAAGTACGTGTCATCTGTAACTCGTTGCTTGCTTTGACTTCTCATTCAAGGATTTTTGGATTGTGGgttttcacttgtcacaaactgCACTGTAACTTTTTTTCTACAATGTCACTTGTcttctgtgtctgtgtgaatgtttgtaaaaacaacaaaagaaaaaatgtcttgttgaatAATAGTCAAGgaaagtttaataatgtttaataaaatgacaaTCCTAAACCTTG
>TCONS_00009914
GAACAAGCCTGTCAGTAACACCAGTGATTCGTTGGCAGTTCTTGGTGTCTTCATTGAGGCCTCTAATGAAACTGGGAAACCTGAGAGCTGGAAGACTTTAACGTCGTATCTTACAAGGATTGTCAAAGCAGGACAAAATACTACCGGTATTTGGGCTCCTTGACCACACCAAACTGCAATGAAGGTGTGATCTGGACCGTCTTCAAAGACCCAATTAGAGTCAGCAGGGATTTGATTGATCTCTTCAGTACAACGGTCTACATCAACAACTCCAGCAACTCTCCTCTAATGACCAACATTTTTAGATCCGTTCAGCCAGTCAATGGCAGGATTGTGATGTCACAGGTAGCAGGTACCAAAACTCCTGGGCTTCTAAATCCAACATCCATTGCAGCAAATCTATCCCCGTCTCTGATGTACCCTATCCTGAGTCTCACATTCTTGTACTGCGTGCTGGCTTTCTTGTAGAACCACTCTGCTCCACGAAATggagggataaaaaaaaaa
>TCONS_00009915
TACACAAAGCTGGTTTTGACTTTGTTAAGGAGAGGAAATTAGGTGTGATCGTTAAAAACTGAAAAGGTTTAAGCATTAAAAATGATGACTGTAATCCTAACCTGTCTTGCAACTTATTTCCTGCACATGGTGTGCAGTGTTTCAGGCTCCATTTCATGGTGCTATCACAGTCCATCATGCAGTGAAGTCACATGGCCCATCATTGCAGAAAAACACTGTAACGGCACTCAACAATCTCCAATAAACATCGTAACCGCTAATGTCAAGGCTAATGCTAATTTGACCTCTTTCACATACGTTGGCTACAATGACAGCACTGCTTTAACTGTGATTAAAAACACTGGCACAAGTATTCAAGTTACGTTGGATCCGAAGAAGATGCGTGTGGCAGGGGGTAATCTGCCAGGCCGGTTTGCCAGCACTGAGTTTCATCTTCACTGGGGAAATGGCAGTGCCATGCCTGGGTCTGAACACACTGTGAATGGAAAACGATTCCCAATGGAGTTGCATATTGTGAACAAGCCTGTCAGTAACACCAGTGATTCGTTGGCAGTTCTTGGTGTCTTCATTGAGCTGGAAGACTTTAACGTCGTATCTTACAAGGATTGTCAAAGCAGGTGATAAAGCAAGCCTTTTCAGAAACTTCTCCATGGATGATCTGCTTTCTGGAGTGGACAGGACAAAATACTACCGGTATTTGGGCTCCTTGACCACACCAAACTGCAATGAAGGTGTGATCTGGACCGTCTTCAAAGACCCAATTAGA
>TCONS_00009916
AAACATGTCACTTTAATTGAATTTAGTTTGAGATGTAAATGCTGctgttttgaaatgtatttaagcTATCTAAATATATATGAGCTTTTAAATATATTCAGCTTATTATGCTAGGAAATCCATAACAGAACTAGAtagtctgtttatttttttcatctccTTTAAAACTAGATGACTGTAATCCTAACCTGTCTTGCAACTTATTTCCTGCACATGGTGTGCAGTGTTTCAGGCTCCATTTCATGGTGCTATCACAGTCCATCATGCAGTGAAGTCACATGGCCCATCATTGCAGAAAAACACTGTAACGGCACTCAACAATCTCCAATAAACATCGTAACCGCTAATGTCAAGGCTAATGCTAATTTGACCTCTTTCACATACGTTGGCTACAATGACAGCACTGCTTTAACTGTGATTAAAAACACTGGCACAAGTATTCAAGTTACGTTGGATCCGAAGAAGATGCGTGTGGCAGGGGGTAATCTGCCAGGCCGGTTTGCCAGCACTGAGTTTCATCTTCACTGGGGAAATGGCAGTGCCATGCCTGGGTCTGAACACACTGTGAATGGAAAACGATTCCCAATGGAGTTGCATATTGTGAACAAGCCTGTCAGTAACACCAGTGATTCGTTGGCAGTTCTTGGTGTCTTCATTGAG
>TCONS_00009917
ATACACAAAGCTGGTTTTGACTTTGTTAAGGAGAGGAAATTAGGTGTGATCGTTAAAAACTGAAAAGGTTTAAGCATTAAAAATGATGACTGTAATCCTAACCTGTCTTGCAACTTATTTCCTGCACATGGTGTGCAGTGTTTCAGGCTCCATTTCATGGTGCTATCACAGTCCATCATGCACATTCTGCTCCATGGCATGCTAGGCTATTagttaattgagGTGAAGTCACATGGCCCATCATTGCAGAAAAACACTGTAACGGCACTCAACAATCTCCAATAAACATCGTAACCGCTAATGTCAAGGCTAATGCTAATTTGACCTCTTTCACATACGTTGGCTACAATGACAGCACTGCTTTAACTGTGATTAAAAACACTGGCACAAGTATTCAAGTTACGTTGGATCCGAAGAAGATGCGTGTGGCAGGGGGTAATCTGCCAGGCCGGTTTGCCAGCACTGAGTTTCATCTTCACTGGGGAAATGGCAGTGCCATGCCTGGGTCTGAACACACTGTGAATGGAAAACGATTCCCAATGGAGTTGCATATTGTGAACAAGCCTGTCAGTAACACCAGTGATTCGTTGGCAGTTCTTGGTGTCTTCATTGAG

Function

symbol description
ca15b Predicted to enable carbonate dehydratase activity. Acts upstream of or within germ cell migration and regulation of intracellular pH. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including blastomere; germ line cell; heart; margin; and ovary.

GO:

id name namespace
GO:0051453 regulation of intracellular pH biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0008354 germ cell migration biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016836 hydro-lyase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2222 Predicted to enable carbonate dehydratase activity. Acts upstream of or within germ cell migration and regulation of intracellular pH. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including blastomere; germ line cell; heart; margin; and ovary.

Ensembl:

ensembl_id ENSDARG00000040510

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009913 False 1686 mRNA 0.40 9 4294923 4301352
TCONS_00009914 False 507 nonsense_mediated_decay 0.45 4 4295549 4298284
TCONS_00009915 False 766 processed_transcript 0.44 8 4297857 4301375
TCONS_00009916 False 660 mRNA 0.40 5 4298227 4301234
TCONS_00009917 True 614 nonsense_mediated_decay 0.43 7 4298227 4301376

Neighbor

gene id symbol gene type direction distance location
XLOC_005111 NA coding downstream 7889 4274910 ~ 4287034 (-)
XLOC_005112 CU571308.1 coding downstream 8443 4286366 ~ 4286480 (-)
XLOC_005110 zgc:92313 coding downstream 45923 4241458 ~ 4249000 (-)
XLOC_005109 NA coding downstream 62418 4231857 ~ 4232505 (-)
XLOC_005108 vkorc1 coding downstream 74210 4217178 ~ 4220713 (-)
XLOC_005114 zgc:153760 coding upstream 7146 4308522 ~ 4317165 (-)
XLOC_005115 ca15a coding upstream 18665 4320041 ~ 4331117 (-)
XLOC_005116 ca15c coding upstream 36922 4338298 ~ 4346085 (-)
XLOC_005117 si:ch211-173d10.4 coding upstream 59441 4360817 ~ 4370585 (-)
XLOC_005118 hrc coding upstream 76248 4377624 ~ 4388704 (-)
XLOC_005105 NA non-coding downstream 100619 4190022 ~ 4194304 (-)
XLOC_005103 NA non-coding downstream 125224 4143594 ~ 4169699 (-)
XLOC_005126 NA non-coding upstream 375810 4677186 ~ 4683350 (-)
XLOC_005128 NA non-coding upstream 515913 4817289 ~ 4817860 (-)
XLOC_005131 NA non-coding upstream 568625 4870001 ~ 4871916 (-)
XLOC_005132 NA non-coding upstream 570665 4872041 ~ 4874669 (-)
XLOC_005134 NA non-coding upstream 659575 4960951 ~ 4963242 (-)

Expression


Co-expression Network