G52060 (LOC104967533,LOC103368342)


Basic Information

Item Value
gene id G52060
gene name LOC104967533,LOC103368342
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22235156 ~ 22237182 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69522
TGTAGGCCAGGAGGGAAGCTGTAGATGATGCAGATACACCCATAGCCTTCATGGCCAGGAAGCTCCAGATCAGGATCTCGCTCTACGATCATTGTACCATTAGCAGGCTGGTTCCCAATCAACAGGCCATACACTAGCCGACACACAGGACACGCTTTCTTCACCTTAAAGGCTTGATCAAGGCAAGAGTGACAGAATGAATGGCCACACCTCTCCAAGGTAGTCTTCTCCACTATGTCCCCCATGCAGATTGAACAAGTACTGTTGTCCTCCGCCTCACTATTGGAAGCCAAGCTGGAGTCCATGTCCTTCCTCTGGGCTGCCTCGTGGAGCATGGCATAGGCCTCCTCATCAGCAGGCTTCCTGAACCTCTGCTGCTGTCTCTGGGAGCGCCGGGGCTGGGGAGGTGGAGGCTGAAGCAGGCTCCCCTCTCCGTTTGACTCCAGGACTCCCACAAAGGGAAGAAGAGTCCTCTTCCTCTTGGGTCCCCCGTCCTGTTTGCTCATTTCTTTGCGGGCACAGCGGCATAAGTCAAAGAAGGCTTTTCTTGTCTCGCTGGAGATGGGTCCATCCATCACCACAGCTCCACCGTTCCTGGAGCTTTCCACCGGCTGCAGCCTCACAGCGCAgcagccccccctctctcctcgcCTAATGATACCAGCGCTCATCCCCTGCTTGTGCTGGAAGTCAATGAGCCAGGGCCGCCCAGCTGCAGCCAGGTAATCCCACACCGCCTGTGAAACCAGCACCTCATCACTGCCCTGGCCAGCACGCACACTCATCTCATCAGAGGAAACCTTGTGATCCCATAAATCCCTGCAATTGTGAATAAAGCGTCCTGTTGAACAGAAAAAGACAGGAAGAAAAACTGAAGGACTGGAACAAACGTTATCACAGCTGTTCGGCGATGTTTTGACTGAGCCATTCTCCGCAGGAGCAAAGGGAAATTCAGCGATTTCGCAACATTAGTTTAGCCTTTGATACATTTCGCGTTAATATTTAGCCAAGTTTACCCCCCTGATTACCTCACCCTTTGCCGTAGCTTGTCGCTGCCTGTCAGGGAGGTTTCTGGCTGGATTAAAGAGCACAGTCCTCCATCAGAGGCCTTTATTTCTGACGTGCCGCTGCAGTTTATCCGCGGATAATACGTATTTTGTAGTCAAGACATGATATCCAAACGTGTTCCCAGCTCATATCTTTAGGTTTTCAACAGCCCTTTTCCTGGCTCTGGCAAATGCCATCAAGATCCTGCACCTCGTCCCCAGTCTCGCCTGTGTTTGCCTTCCTCGTACGTCCTTGGGCTAGGCGGAACATAAATAGCATTTGTAGTTAGCCTACTCTTCTTATCTGGCTCCGACCATGCTAGCTGTGTGACAGCTTTCTCCAGGCAGATAATTTGCTCTTTCTTCTCATTTTGAGTCTGTGTCTACGCTTTCAGACCACGTCCTCCCTGTTGACTGTGGGAGCAAACACGTATCCATTAATTATACGGGGACGATGGGACCTACGA

Function

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase DTX3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69522 True 1513 lncRNA 0.52 2 22235156 22237182

Neighbor

gene id symbol gene type direction distance location
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding upstream 21292 22203091 ~ 22213864 (+)
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding upstream 36046 22184296 ~ 22199110 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding upstream 115547 22110987 ~ 22119609 (+)
idh3g idh3g coding upstream 206862 22022834 ~ 22028294 (+)
ribc1 NA coding upstream 407266 21823518 ~ 21827890 (+)
ptges3a LOC107390842,LOC103368333,LOC104967534,LOC100704884,LOC106525288,LOC108244561,LOC101471106 coding downstream 3300 22240482 ~ 22244763 (+)
mipa LOC103368323,LOC101065051,LOC100704616 coding downstream 9773 22246955 ~ 22248730 (+)
LOC120558509 NA coding downstream 151367 22388549 ~ 22397004 (+)
LOC120559492 def6 coding downstream 264274 22501456 ~ 22515546 (+)
ppardb ppard coding downstream 280057 22517239 ~ 22524940 (+)
LOC120558498 NA non-coding upstream 58745 22173144 ~ 22176411 (+)
G52035 NA non-coding upstream 97824 22111469 ~ 22137332 (+)
G52031 naa10 non-coding upstream 128211 22105645 ~ 22106945 (+)
LOC120558642 NA non-coding upstream 148923 22085266 ~ 22086233 (+)
G52006 NA non-coding upstream 203637 22031209 ~ 22031519 (+)
G52064 NA non-coding downstream 17113 22254295 ~ 22254973 (+)
G52054 NA non-coding downstream 103201 22340383 ~ 22346646 (+)
G52179 NA non-coding downstream 237048 22474230 ~ 22476314 (+)
G52185 NA non-coding downstream 243361 22480543 ~ 22484101 (+)
G52272 lhfpl5,LOC102777996 non-coding downstream 393412 22630594 ~ 22631144 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 140266 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 174511 22046763 ~ 22060645 (+)
G51926 NA other upstream 331079 21903542 ~ 21904077 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 427242 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 515033 21717109 ~ 21720123 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 319147 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 324972 22562154 ~ 22562521 (+)
lamtor5 lamtor5,LOC102787529 other downstream 604862 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 754070 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 1509183 23746365 ~ 23765165 (+)

Expression


Co-expression Network