G52272 (lhfpl5,LOC102777996)


Basic Information

Item Value
gene id G52272
gene name lhfpl5,LOC102777996
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22630594 ~ 22631144 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69795
CTCTTCCTCACCAGAGGCCAGCTGCATCCACGCACAGATCTTGTAGACGTTCCCGGCGTTGCAGAAGAAGAACAAGCTGAAGCAGACCATAGTGCCCACAATCAGCAGCATGGAGGTCCCCACGAAGAACATGGCGGTCCTGAAGGCCGGTGAAGGGATGGAGCTGAAGTCGAACACGCTGCCCTTACAGATGAGCTCCGAGGTGAGCGCGTTGCCGATGCAGTAGTGGAAGAGGCCGAAGTAGCCGGCCTGCGGGGTGTTGACGCTGTCCCCGATCCAGTAGGGCTGGATGAAGACCACCATGGTGATGATGACAAAGCAGATGGTGAACACGGCCCACATGACGCCGATGGCTCGAGAGTTTCTCACATAGTTGGTGTGGTAGATTTTAGCAGCTTCCTGGGCTGGAAGCAGATCCATTTTCCAAGTATTTCTTTAAGTATGTCCGTCTTCAGTAAATcagtaaaacatttttcaaaactcaatCCACATGTCCTGAGTCTTTAAACTCGccacatcacacaaacacactcacacctgctgctgctgtg

Function

symbol description
lhfpl5 Predicted to be involved in detection of mechanical stimulus involved in sensory perception and sensory perception of sound. Predicted to act upstream of or within auditory receptor cell stereocilium organization and detection of mechanical stimulus involved in sensory perception of sound. Predicted to be located in stereocilium bundle. Predicted to be active in plasma membrane. Implicated in autosomal recessive nonsyndromic deafness 67.

NR:

description
PREDICTED: tetraspan membrane protein of hair cell stereocilia

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69795 True 551 lncRNA 0.52 1 22630594 22631144

Neighbor

gene id symbol gene type direction distance location
srpk1a srpk1 coding upstream 3435 22611970 ~ 22627159 (+)
mapk14a LOC103368176,LOC104964410,LOC104939458 coding upstream 19798 22597224 ~ 22610796 (+)
elapor1 kiaa1324 coding upstream 34392 22585431 ~ 22596202 (+)
smc5 smc5 coding upstream 49009 22565944 ~ 22581585 (+)
LOC120558833 NA coding upstream 84754 22538280 ~ 22545840 (+)
cpne5a NA coding downstream 22357 22653501 ~ 22725592 (+)
adora1b adora1,LOC103368126,LOC101166301,LOC102200284,LOC101484151 coding downstream 160521 22791665 ~ 22795982 (+)
mmp9 mmp9 coding downstream 175779 22806923 ~ 22811471 (+)
LOC120559125 NA coding downstream 180726 22811870 ~ 22823643 (+)
LOC120559530 LOC104964419,LOC104927136 coding downstream 195487 22826631 ~ 22828548 (+)
G52185 NA non-coding upstream 146493 22480543 ~ 22484101 (+)
G52179 NA non-coding upstream 154280 22474230 ~ 22476314 (+)
G52054 NA non-coding upstream 283948 22340383 ~ 22346646 (+)
G52064 NA non-coding upstream 375621 22254295 ~ 22254973 (+)
G52060 LOC104967533,LOC103368342 non-coding upstream 393412 22235156 ~ 22237182 (+)
G52287 NA non-coding downstream 94729 22725873 ~ 22726131 (+)
G52288 NA non-coding downstream 95453 22726597 ~ 22729555 (+)
G52294 NA non-coding downstream 118919 22750063 ~ 22762554 (+)
G52333 NA non-coding downstream 203654 22834798 ~ 22847296 (+)
G52342 rbm15 non-coding downstream 252905 22884049 ~ 22888687 (+)
LOC120559933 NA other upstream 68073 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 70266 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 535704 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 569949 22046763 ~ 22060645 (+)
G51926 NA other upstream 726517 21903542 ~ 21904077 (+)
lamtor5 lamtor5,LOC102787529 other downstream 210900 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 360108 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 1115221 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 1160303 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 2309651 24940795 ~ 24945320 (+)

Expression


Co-expression Network