G52342 (rbm15)


Basic Information

Item Value
gene id G52342
gene name rbm15
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22884049 ~ 22888687 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69880
TAATCGGTCACATTAAGTGCCCAAACGCACTTGCAGGTATGTGAACAGCTTCGCATGGGCTCTATGGACTTTCCTTTCCCATGACATCAAAGTGTACATTGCTCAATTTTCCATTTAAAACAGAAGTCATCACAGGTGCAGATGGGATACACAACTTAAAAGTTGCCTCATTAGTGAGGACTCACAAACATCTCTGCAGAGGCTTTCAGCTCTGCACTCATCTCCACATGAGTCCAACGCTGAAGTGGGTTTGATGTTCACACATAACATTTTTCTGAcgtattcatttttttcccaatacattttaaaccaaACTCAGCAAATAATAATTCAGGGTGGATTACTATTGCATGACAAACATACAATGGCAAAACAAAATACGGTAAGTAGGCCTTGGGAACATGTTGGCAGGCATGAGTAAAATATTGTCAAATGTATACCTCTAAACTTTAAATTCAAACATGAATTGTTAAAAGTATTTCTAAAACTTTAAAACTTACACAGACCTACTTACTGAACAAATAGCAGGTTTTTGTTACTTTGTACCAACATTTCACTGATACTGAATATTATTATTCTTGGAGGTCCTACTGGTTTCAGAGCAAAAAATGAAACAACACAAAACTCTCTAAGCTTTTTTATCCATTACTACTGTAGTTTTTCAtagatcacattacacaacCATTTCTAAGGTAGGGATGCATAACATAAAATATGaagtaaaaatatgaaaaacatgTTAGCATTTACTTTACTATGCTATGCGCATTGTGTTATGGGCTGCTCCTTGGGCAAAAATCTCACATCTGTTAGTATTTAGCATTCCACATAGAGTTGACATTACAGTTTAGTTTTACCAGTGGACATGCACTGTCTATCGTTGTCTATCTTGCAATTTGGTGTTTCTATATTGCgaaacacattaacaaaagaTACTCTCAAATCCAAACCATGAACCTGAACAGAATTTCCAAACAGAATTCACAACATAAAACAAGCTAGAGACTCTTTAACTAATGATCTTGAAAATGTTTTCCAACTTTAAGAGCACGCACAGCCAGGCCTGTGTGAATCCGGTCCATCAAAACTAAAACACATTGCGTAACTTTTCTTCAGTACACCACACTCGTTCACCAAACTGAATAAGCTTTCATGTTTTCATCAGGATGAAGGCAAGATAACCGAAAATATCTGGTGAATCAAGTGTGGTGTGCTGGAGAAGAGTTGCGCGACGTGTGTTGACATTTCAAATGTTCCTACTCCTGATTAGCTTTGTGACTGCAGTACCAAATCATTCACTACACCCTTACTGAAAACCTTCAATTCAAAAATGTCATGCTCATCTTTGTCTCCATCCATCAAAAAGTGTATATCGTTTCAGATTATAATGTCAATGCCAGAATAGGTGGTATACACAATAACACCTATACAATCTAAGGCAATAGAGTACAATAGCCAGGACACAAACATGACCTTTGTTAAGCTTGTAATTTGTTAGCTTTTGTTAACACTGTCAGGGAGGTGTGGCTTGTGAGGCCACTGTTTGTGGTTTCATTGTAATGGAGGTGTTATTGTATATACTCAATGCATTTCTAAATACTCTAGTGCTTTTCTTGTAGTACTTTTCTTCATGACATCTCTTCTTAAATAAaactcaaaatgtattcaacGGATGCTCCTCATATTTTACTGTTTTACTGTATTCTGACTGAATTACTGCAGGTTTCTGATTGTGAGCAATTCATAcaccctttaaaaaataatttcaaaaacaCATCGTTTTAGTTATGTAGGAGGGTCTGTCCTTTTAGTGGATTACATGGCATCATACAAACACTCAAGAACCATACTAGTGTACCCCATGATGCAGAACACACAGCATGCAATAGTTAGTGACATACAGcagattttctttctttttttctttacaccaCTTGAATTTAGtgttctgattttttttttttaagatgctcCACGAACCACAATCATGACCAGATAGTCCTCTTCACTTTTAGCCAGAGCTTTGGCAGAGGAATCCAGAAACTGCTGGGAGAAATCACAGGGAGGGAAAGCATGAAGAACTCCTGTGTTGTCTTTATCTCGGCTCCCTCCCACAGGCAGGCTGATGACTCCAGCTGCTTGTTTTTGGTTGAGGTAGGACACCAGGTTGCGAAGCGGCCGCTGAGTTGAGGCTGCAGGGTCAGATGAAGATAAATCCTCTGTGGTCCCAGGAACTGCCAGCAGGATGGCGTAGCCACCGGGACCCGCCACCTTGATGCGCCGGGACACCTCATCAAGCTTGGGCTGGTCCAGACGGAGACGCTGGGTGATCTTTAGCTCGCTCACCTGCCTCCCTGTTGTGCCCTCAACAAGCAGGTCGCTGGCTACGCTGTGATCACCCTCCAGCAGGTGCATGTTGGCTGGGAAGTTGCTGTTCTTAAGCAGCAGCATACCATGCCAGGCCAGACTGAGTTTGGTGCCATCTGGTTTGGACGGCTGGCCTCCCTTGAAACTGCTCTCAGAACGTTCTCTCTTGGCTGGCCCCTTCCCACCATCGCCTGCTTTGCGCTTACGCTCTCCAACTGCTGAAAGGCTGCTGCTAGAAGGTCCCTTGTCAGAGAGACTCTGGCTTTTGAGTCTTCGTTCAGCCCCACCTTTTTCCAGGCTGTTGTGACGTTCTTGTGCAGGGGAGGGCCTCTCACCTCGCAGAGGGCGCTCTGAGTCACTGAAGCGGCCTCCATCTCTGCTGCTACCTCCAGGACTGCCATCTGGAGAAGCACGTCTACGCCTTACTGTCCTCTCAGTGCTGTCAGGGGAGTGGTCTATATGTCGTCCGTCCTCCATTACACGCCGCTTGCGTGCAGGTTCTCGTCCCTGCAGCTCTCGTTCCAGAGACCAGGGCTCTTGTGCCCGCCGCTCACGTTCCAAGTGCTCCAGAGGCTCAAAGGGTGAGGCACGTACCCGATCACGAATAGCTGGGTTGGGCCACTCAGTTCCAGGAAAGAGCTCTCTCTCCCTGAAGTGAAGCGACGGTGGAGTCCGTTCCCTGACCCTCAGAGGTTCAGGTGTGGCACGGTGGACAAATGACTCAGCCACCATGTCAAACGGTGGTATTGGGAGAGGCTGCAGGAACTGCTGCTGGTAACGATGCTCATTGTCAGCAAAGTCCACTCTAAGTCTTCTCTCTGGTCCTCCCAGTGGGAAGCCcctcatgtgtgtgcatgctgctTGTGCAGCGTCCAAACTTTCATACTGAATGTAGGCCCAAGTATCCCCTTTTCTGTAGTCAATGCTCCTTATAGTGCCAAAGCGATCAAACTCTCTTGCCAGGGCAGCCACAGGAACCCAGGGTCCAAGTCCACCCACCCACAGGCGTGTGCTGGGAGTTGCTTTCCCATAGCCTATCTTTATGGCGTTGTGGCCTACTATTTTGCCAGACATACTTAGCTTTGCGCGGTGAGCCATGTCAAGATTCTCGAATTTCAGAAATCCATATGTGCTGGTCTGTCCCCGTGTGGGTCTCTTAATGTCCACTTCTGTTATGACCCCAAACCTGTCAAAAGCTCTCCTCAGGTCTGCTTCTGTCACAGTTATGTCGAGATTGCCTAAAAACAACGTCCTATTGGCTCTTTGGTCATCTTCTGGAGATATAAAATCCTCCTCACGAAAAGCTGCTCGCTCAGCAATGAAAGCTGGGCGTGCCCTGGCTTCAAACAGGGCAAACTCCCTGTCCCGCTCCAGTTCTCTGGGCAAAGGGGGCGGCGGGGGAGGGGGGAGCCGACCTAAGGCCAGCTGCTGCAGCCGGTAGTCTCTGTATCCAAGCCCAGTGGGCGAGAGGGGTCTCTGCAAATGTCTATGGCTTTGAGCTGCACCATACAAGTCTCTCTCCACAGGGGAGCGGCTTCTCCTCCTGTTAATGTACACTGCCTCAATTTTCAGCGGGCGGTCGTACAGCACTAACCGTCCCCTGGCGTGCTTAGCAGCTCTGGCGTCCTCCGGCTTCCTGAAATTCACAAACGCTATCCGCTCGTCGTTGCTACGGCTTATCTTAACGCTCACATCTCCgaattttttaaattcatgaaaGAGTCCGTCCTCTATGTCTTCGTCGCTCAGCTGGGTGCCGAGGTCGCTTATTTTGAGGGTTTTGTAATCACTCTCGGTGCTGGGCGGCTGCACCCGCTGCTCCCCCCGTGAAGTGGTCCTCGGTGAGGCTAAATCCAGCGTCAGGCTCAGGTTGTGGTTTTTACCGAGTGAGCTAGCGGCAGCAGACTGACAACTGTGATTATTTCCAGTCCGACTATGACTGTCGAAATCTCTTTTTTCACCGAGCAGACTCCTTCTCGTCGAGCCGCCGTCGCCTTTGGTCGAGCTATTTCCATTATTACTCCCACTGGAAACAGAGAGAGCCCCCATTTTCTTGCTGGTCGGATGGCATCCTCCCCTGTCTCGTATATCGTCCAAGGCCCGAGAGCGTTTTTTAATCGGCGACCGCTCTTTACCTTTCATCTCAGTCCACACGGAGCCGACCCTCGGGACGCCTGggcttttttattgttgtttctgCAAATTAGTGCAGGAAATTATTGAAATGAAAAACGGATTTATTCACTGACCCTGCGGCAAAACAACAACAGTC

Function

symbol description
rbm15 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Orthologous to human RBM15 (RNA binding motif protein 15).

NR:

description
PREDICTED: putative RNA-binding protein 15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69880 True 4639 lncRNA 0.47 1 22884049 22888687

Neighbor

gene id symbol gene type direction distance location
slc16a4 slc16a4,LOC102787232 coding upstream 6787 22847985 ~ 22877262 (+)
LOC120559530 LOC104964419,LOC104927136 coding upstream 55501 22826631 ~ 22828548 (+)
LOC120559125 NA coding upstream 60406 22811870 ~ 22823643 (+)
mmp9 mmp9 coding upstream 72578 22806923 ~ 22811471 (+)
adora1b adora1,LOC103368126,LOC101166301,LOC102200284,LOC101484151 coding upstream 88067 22791665 ~ 22795982 (+)
slc6a17 slc6a17,LOC104944562 coding downstream 31087 22919774 ~ 22942875 (+)
ngrn NA coding downstream 142609 23031296 ~ 23033104 (+)
sypl2b LOC104926818,LOC104942234,LOC103367903 coding downstream 168362 23057049 ~ 23061335 (+)
gpr61 LOC104942230,LOC103367872,LOC101482146,LOC102303595,LOC100709777 coding downstream 210866 23099553 ~ 23104095 (+)
gnai3 LOC103367862,LOC105931781 coding downstream 221243 23109930 ~ 23126912 (+)
G52333 NA non-coding upstream 36753 22834798 ~ 22847296 (+)
G52294 NA non-coding upstream 121495 22750063 ~ 22762554 (+)
G52288 NA non-coding upstream 154494 22726597 ~ 22729555 (+)
G52287 NA non-coding upstream 157918 22725873 ~ 22726131 (+)
G52272 lhfpl5,LOC102777996 non-coding upstream 252905 22630594 ~ 22631144 (+)
G52379 ahcyl1,LOC104942237 non-coding downstream 120490 23009177 ~ 23020008 (+)
G52364 nfya non-coding downstream 132119 23020806 ~ 23023328 (+)
G52403 atp5f1 non-coding downstream 252223 23140910 ~ 23192988 (+)
G52461 NA non-coding downstream 333239 23221926 ~ 23246504 (+)
LOC120558323 NA non-coding downstream 376544 23265231 ~ 23275195 (+)
lamtor5 lamtor5,LOC102787529 other upstream 37111 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 321528 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 323721 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 789159 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 823404 22046763 ~ 22060645 (+)
atxn7l2b kcnc4 other downstream 102565 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 857678 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 902760 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 2052108 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 2064755 24953442 ~ 24957330 (+)

Expression


Co-expression Network