G52364 (nfya)


Basic Information

Item Value
gene id G52364
gene name nfya
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23020806 ~ 23023328 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69903
ATGAATGTCCAATCTTTTtcccattataaaaaaaataataaaataacattgCAGAACTGCATCtgatgggtaaaaaaaaaaaaaaaatctactatctacattgaaaaaaacagaacactTCGTTGGACTGACCAATGAAGAATTAACTACATGGATAGAATTTGTAATGTGATGAAACAGTCATTTTTTGCCTACAAACACTATGTGTAAACACAAAATTGTATAAAACGCATCCACAGAATTGGGCAAATTAATAAGTACATCCAATACACACTGGGGAAGAAAAGAATTTCTGTACAATATCTTCACATTAGCTACAGTACACATTTCAGTTTTTGCTCAGTGGACACAGGTTGGACTTATGAAGCTGAGTCCATCCCCCACAGTACAtgggttgaaaaaaaatgaaatgtcaaaATACAGGGCATCACATAAAAGATATGACACCAATGCGTCATGAGTGtctctgaaaaaaaatctgtaccatttacaaaacatttttaaagcaaCAAGTATCCACTGGTGACACATTCTCATCTTTTTAACAGACCAGGGTCTGACATGGCTTCACAGCTGATATTTGCTCTGAGTGACTAGTCCTGGTAACCCATAACACCATGCTTCATTATTGTCTAAACAAATAATTGTGAAAATTAAAAGCTGGTCGCCAACGCTTAACCAGATAAGCTGAGGGTATAAGCATCCTCCATTCCAGAGAAGACCAGTAAAGTCCACAGACTCAGCATCCACATGGTCAGCTCCCTGGAAGACCAGTATAGGAGAGGAGAGATAATAGAAGAAACCCAGTTGCGGTGCTGTGGTTTGGTGTACTTTATGACGGCAGGGCAGGAGGGAGTAAAAGTCAGAGGAGAAGGCGCGGCAGATCAGGTTAGCTTGAGTGAAGAGTCTCGGGGTAGAGTTCACAGACAGAAGTGCTATGAGACTCGGATCATCTGAGCCACCGTCTCATCTGCCGCTGCCTGGGCTACCTCCTGCTGTTGCTGTGCCAGAGCCAAAGCCATTTCCTCCTTGTCCTTAGGTGAAAAGAAACGTCCACCATCTCCTCGCTTGCGCTGCATAGCGTGACGGTGGCGAGACTCGTGTAGGTATTTCTGCCTCCTTTCCTTGGGGATCTTGCCCTCAGCCTCCAGCTTGGCCCGGGCCTGTCTACGCTTCAGGATGCGGTGGTACTGTTTGGCGTTGACATACAGAGGTTCCTCCTCGAGCATCTCAGCCCCTGGCAGGGGAATACGCTGCATTGTGGGAACTGCGCCACCTCCAGGCACCATCTGATAGAgggagagacacaaacaggacaCAGTGTTTTGAGCCTCTGGCGTGGAAAGCACACATGTATATCGGCATGCTGACACAAACAAGTAGTTACTGTGCAAATACAGGCGCTTTCAGTCATTCCTTAGTTATAGACCTTTTCTACAGGCTGACACTGGGTGGAGTTATGCTGGGAATTGCATGAGGTCACTAAATATCCTGAACTAATAAGAATCATAAAAAGGTGCGAGTTGTCCCGCCCTAACAAGTGCAGCAGAGGTGAGGGAGATGTCAATCAAACAGTCTGTAAACGCCCATCCATTTCAGGCAAAATAAGTGAAAATACCTATGTGGGTGGACAATGAGTGTTAGGGGCTTTAAATTAACAGTAATATTCACTGAATTTAATGGCATGGTTTAAGAAACtgaacaaaaaactaaacaaaatattt
>TU69904
ATGAATGTCCAATCTTTTtcccattataaaaaaaataataaaataacattgCAGAACTGCATCtgatgggtaaaaaaaaaaaaaaaatctactatctacattgaaaaaaacagaacactTCGTTGGACTGACCAATGAAGAATTAACTACATGGATAGAATTTGTAATGTGATGAAACAGTCATTTTTTGCCTACAAACACTATGTGTAAACACAAAATTGTATAAAACGCATCCACAGAATTGGGCAAATTAATAAGTACATCCAATACACACTGGGGAAGAAAAGAATTTCTGTACAATATCTTCACATTAGCTACAGTACACATTTCAGTTTTTGCTCAGTGGACACAGGTTGGACTTATGAAGCTGAGTCCATCCCCCACAGTACAtgggttgaaaaaaaatgaaatgtcaaaATACAGGGCATCACATAAAAGATATGACACCAATGCGTCATGAGTGtctctgaaaaaaaatctgtaccatttacaaaacatttttaaagcaaCAAGTATCCACTGGTGACACATTCTCATCTTTTTAACAGACCAGGGTCTGACATGGCTTCACAGCTGATATTTGCTCTGAGTGACTAGTCCTGGTAACCCATAACACCATGCTTCATTATTGTCTAAACAAATAATTGTGAAAATTAAAAGCTGGTCGCCAACGCTTAACCAGATAAGCTGAGGGTATAAGCATCCTCCATTCCAGAGAAGACCAGTAAAGTCCACAGACTCAGCATCCACATGGTCAGCTCCCTGGAAGACCAGTATAGGAGAGGAGAGATAATAGAAGAAACCCAGTTGCGGTGCTGTGGTTTGGTGTACTTTATGACGGCAGGGCAGGAGGGAGTAAAAGTCAGAGGAGAAGGCGCGGCAGATCAGGTTAGCTTGAGTGAAGAGTCTCGGGGTAGAGTTCACAGACAGAAGTGCTATGAGACTCGGATCATCTGAGCCACCGTCTCATCTGCCGCTGCCTGGGCTACCTCCTGCTGTTGCTGCCAGAGCCAAAGCCATTTCCTCCTTGTCCTTAGGTGAAAAGAAACGTCCACCATCTCCTCGCTTGCGCTGCATAGCGTGACGGTGGCGAGACTCGTGTAGGTATTTCTGCCTCCTTTCCTTGGGGATCTTGCCCTCAGCCTCCAGCTTGGCCCGGGCCTGTCTACGCTTCAGGATGCGGTGGTACTGTTTGGCGTTGACATACAGAGGTTCCTCCTCGAGCATCTCAGCCCCTGGCAGGGGAATACGCTGCATTGTGGGAACTGCGCCACCTCCAGGCACCATCTGATAGAgggagagacacaaacaggacaCAGTGTTTTGAGCCTCTGGCGTGGAAAGCACACATGTATATCGGCATGCTGACACAAACAAGTAGTTACTGTGCAAATACAGGCGCTTTCAGTCATTCCTTAGTTATAGACCTTTTCTACAGGCTGACACTGGGTGGAGTTATGCTGGGAATTGCATGAGGTCACTAAATATCCTGAACTAATAAGAATCATAAAAAGGTGCGAGTTGTCCCGCCCTAACAAGTGCAGCAGAGGTGAGGGAGATGTCAATCAAACAGTCTGTAAACGCCCATCCATTTCAGGCAAAATAAGTGAAAATACCTATGTGGGTGGACAATGAGTGTTAGGGGCTTTAAATTAACAGTAATATTCACTGAATTTAATGGCATGGTTTAAGAAACtgaacaaaaaactaaacaaaatattt

Function

symbol description
nfya Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of CCAAT-binding activity factor complex. Orthologous to human NFYA (nuclear transcription factor Y subunit alpha).

NR:

description
PREDICTED: nuclear transcription factor Y subunit alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69903 True 1724 lncRNA 0.43 3 23020806 23023328
TU69904 False 1722 lncRNA 0.43 3 23020806 23023328

Neighbor

gene id symbol gene type direction distance location
slc6a17 slc6a17,LOC104944562 coding upstream 77931 22919774 ~ 22942875 (+)
slc16a4 slc16a4,LOC102787232 coding upstream 143544 22847985 ~ 22877262 (+)
LOC120559530 LOC104964419,LOC104927136 coding upstream 192258 22826631 ~ 22828548 (+)
LOC120559125 NA coding upstream 197163 22811870 ~ 22823643 (+)
mmp9 mmp9 coding upstream 209335 22806923 ~ 22811471 (+)
ngrn NA coding downstream 7968 23031296 ~ 23033104 (+)
sypl2b LOC104926818,LOC104942234,LOC103367903 coding downstream 33721 23057049 ~ 23061335 (+)
gpr61 LOC104942230,LOC103367872,LOC101482146,LOC102303595,LOC100709777 coding downstream 76225 23099553 ~ 23104095 (+)
gnai3 LOC103367862,LOC105931781 coding downstream 86602 23109930 ~ 23126912 (+)
ampd2b LOC103367831,LOC100709506,LOC102200760 coding downstream 122358 23145686 ~ 23167490 (+)
G52379 ahcyl1,LOC104942237 non-coding upstream 798 23009177 ~ 23020008 (+)
G52342 rbm15 non-coding upstream 132119 22884049 ~ 22888687 (+)
G52333 NA non-coding upstream 173510 22834798 ~ 22847296 (+)
G52294 NA non-coding upstream 258252 22750063 ~ 22762554 (+)
G52288 NA non-coding upstream 291251 22726597 ~ 22729555 (+)
G52403 atp5f1 non-coding downstream 117582 23140910 ~ 23192988 (+)
G52461 NA non-coding downstream 198598 23221926 ~ 23246504 (+)
LOC120558323 NA non-coding downstream 241903 23265231 ~ 23275195 (+)
G52509 NA non-coding downstream 424025 23447353 ~ 23447557 (+)
G52569 NA non-coding downstream 663024 23686352 ~ 23687361 (+)
lamtor5 lamtor5,LOC102787529 other upstream 173868 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 458285 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 460478 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 925916 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 960161 22046763 ~ 22060645 (+)
tmem201 tmem201,LOC102777799 other downstream 723037 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 768119 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 1917467 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 1930114 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 2720261 25743589 ~ 25748321 (+)

Expression


Co-expression Network