atxn7l2b (kcnc4)


Basic Information

Item Value
gene id atxn7l2b
gene name kcnc4
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22991252 ~ 23068479 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69915
attaaagtacaaaaaacacCTGGTGAACTCACCCTGGCTGCTCTGGACGAGTACGGGTCGTCAAACAAGGCCCAGACCTTTGGCTGCCAAACTTCGCAGCAGCCCCTCGACCTGTCGGGACAGTCCTCGATGCCGAACCGCCTCGGCATCTCTCTGTCGTCGTCGGTCTCCGGGTCTGGCGGTTCAAATGTCTCCAGAGCCTCCTCAGCGTCCCGGTGCTGCCGGTAGGTCATCCAGCAGCACGGCTCCACGTCGGTCTCGTCAATCCCCCAAAACGCCAGCTCCTCCTCGAAGAGCGGCCCACAGACGTCGGCCGGGCAGTGCAGCTTGCCGGTTCGGTAGTAGTTCAGCACGTAGGCAAAGATGCCCGGGTGTCTGTCGAAGAATAACTCGGCACTCGGGGGTGCAGCGTCCGAGTTGACCTGCAGGTCCGGGTCTGCCAGCCATGCCAGGCGTGTGCCCGGCAGGGTCCTGAGGGTGCTCTTGTAGGTTTCATGTCGAGTGCCGCCCACATTAATGATAATTTTGTCCGAGTCTTCCCCTCTGTACATCTCCTCCTTCAGACATGTTTTAGATGGAGGTTTGTTGCCTGACTTGCGCCCCCGGTAAGACGAAACGCACACCGAGCTGATCATTTAGAAGCAGCTAGGGACCTTCTGGCTGCTCGCCCTTCCGTTACAAGCTGGTGTCCACTCGTAGCCTACAAAGAACTCAATAAATGAACGCAAAGTCCGCACTCATTTCAGACCCCACTCCACAAAATGACAGCATAAAACGATCCAAACAGCGTCAAAGTGAGACGCTCAATAAAAACCACCTGTTACAAAACTCCGTCTGTTGTCGCAACAAAACGCATGTGGTAAGGCTAacttaatgtgtgtttttaaaatgtttttgtcgaaTAGATTGCACAATGTGACTTAGGCTAAATGAATGCTTCCAGATGTTGCACTTATTTCCGCTGGGGAAAacaagttgcaaaaaaaaaattggcagTAGGCTATACGTGCATATATGGCTGAACCACTTAGCAACTCCTCACCCCCCTTTTTTGACAAATGTTATCCAAATAATGCAACGCCAAAATGCACAACTCTTCCTGACAACTTTTCTCTTCTCCACACAAGGAGGAAACCTGACAATGATCCAGTCACGCATTTAATCACGCGCTGAGATATTCCTCCAGTTGTCCCTGCTCAGCTCGCGTGCCAGATGTGGGGTTGTTTTCCAGCTGGGGatctgttgcttttttcacAAGTAGCCTATCTTCCCTTAGCGACACAGCCCGGTTGGATGGTGCGTTCAACAACAGGCTCGGCAATTTAACTCTTTGGCTGCTGGCGGAGGTTGGCGCATTAGTGAACCACTCCCTCtaatcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtttatgTCTTCATATTTCTATGCACAGACATCAGGAAAGAATATTTGTCTGCATGTTAccgtctgtgtgtatttttgcaAAATGTCTATTTTTCTAAGTGATTGTCTCAGTTTAACAGTGTAAGAATGTAAAAATACCTCAATCTACTCATCATGCTgctaaagtgaaaaataattccatgaaaaaacaataaaaaattctttaatc
>XM_039800302.1
CACAGTTTCGCGGCCGCGAGCTTCGTGACGCGGATGTGATGCGCGTGAACTGACTGATCACCTCGTCAACGCGCAAGAGCAGCAATGGCCGCTTTGGATCGGCGAAATCCTAATCTCGACGATTTTGTCGGATTAAACTGGAGTAGTTGGGTAAATAGGGTGAATATTTTACCATCTGACGCTGGTTCTAATATTGAAGACAGCAGCAAGTATGGGAGCAACCGCTCTGAGACCATGACCCTCAGGAAAGAAGATATGCACACATTTGGTAAATGCCCAGCACACGATGAGATCTATCTGGTGGTGTGCAGCCACTGTGGCCAGGTGGTGAAGCCTCAAGCCTTTGAGAAGCACTGTGAGAGGCGGCATGGTCCTCTTACTAAGATGTGTGGACAGTCTTCTACTTTGGCTCCACAGCAGCGACCTTGCCCTGCTCGCCCTCTTTCAAATCATTCCTCCTCtagagagaggcagaaagaTGGCAGACGTCATGAAGCCAGTGCCCCCGCCTCAGCAGCATCCCTGGTACACCAGCACAGGCCTAGCAAGGCCCAGAAGGAGGCAGTGAGTTTTCCTTCAGTGGAGAAGATCCATCAGGAGAATGCTCCCTTCCCACACCACTCCTCCTCCACGCCTCGCCCCAGGGTCCCTCCATGGCACTCAGGACCCCTGCCCCCTGGCCACTGTTCCTCCTCCACTTCTCCGTCAGAGAGACCCTCAGTGCAGAAGCCCACAGCTGGGCAGTCCAGTGAGTCTCACAGTCCTCTACGGGGAACGAGAACCTACAGCCGAGTTTACAAAAACAGCAATAAGAAAGAATGTGACCTGAACAAACAGTGCAGAGTTCTGGATCcagagggaaagaagctgtGCAGCCAGGAGCGTATATGCAATACTGATTCCATCCACCAGCAGCAGAAAGCATCGGGAAGGACTAAGACCTTTGGTCAGTTGGCAGAGGAGCAGAAAACAGCCTCCGCAGGTCGAGATATAGAGCAGCTTCTTGTCAAATCAAAAGACAAAGAGCAACACCTGGAAGCCTTTAAAGAGAAAATAACTCGGAGCAGTAAAAACTGTCACATTCTCAGCAGGTCCGGGGAACCATCAGAAAGCGCTCCAGAGGAGGAAGGTGACAGCACTGTAGAAGTGCAGGCACAGCCTCAATATCCCGTCAACCCGAGTCTGCTGTCAGGCGAGGAGAGTGAAGACTATGAGCAGGAGGAAGCCACAGACCTGCCTGCCACACCATGGCACCCTAAACCACTCAGGCTATGCACTTTTGGATGCCGCACATTGGGCTGCAGCATCTTCACCTTCGATCGCCGTTTACAACACCTGCGGTTTGCCCTCAGTGCCATGCTGGAGCACCATGTCAGCACACACTTGTGGAAGAAAATGCCGCAAGTATCATCAGGTCTCAGGTCACGTCATGTAACACCTCCAACGGTAGGATCACCGGTCAGGACTGGGGCCAGACCCTCtaactccactggctccctcaGCCTTGAGTCTACCTCACTGGGACAATTGGAAACCAAAACCGGTCAGCACAACTCTCACAGTAACAAACTGCCTTCTTCCATTACATCTGCGAGACTTGGGCCTGGCCGACGGCGCAACCCTGTTGGGCGAGCCAGCAAGTCTCGACTGAGGGAGGAAGAGCTTATGCAAGATGCAAGCGCAGCACAGAAAGCTGCCAAGCTGTCACACAGCAGTGAGGAAAAATCCTCCAAATATATCCGGGATCCTCCCCTCAATGAGAAGGGCCAGCCACACGTCCCCTCCTCTCAAGGACCAGTAAATGGTACCTGTTCTTACGGGAAAAAGCCATGTCCTCCTCTCCACCGCCCCGCCCGCAGCAGAGGGAGGCCCCCAGGCATTCAGCAGAAGGTGGTAGGCTACGAACACAAGGGTCTTGCCCAAAAGCGCAAAGGCAGCAATGAGTCACCGCCCCTTGGCTCCTCACTATCCAGAACCTCTAAGTGTCAACGCTCGGGGACGCCTGTGCTTTGGGCTTGGAGAAAAGATCAGACTCCTGAAGAccCATAAAGAGGACAGCCTTAAAAAGACCACCTGGAACCACTTAGCAAGAGGAAACCTGACAATGATCCAGTCACGCATTTAATCACGCGCTGAGATATTCCTCCAGTTGTCCCTGCTCAGCTCGCGTGCCAGATGTGGGGTTGTTTTCCAGCTGGGGatctgttgcttttttcacAAGTAGCCTATCTTCCCTTAGCGACAGTCCGGTTGGATGGTGCGTTCAACAACAGGCCCGGCAATTTAACTCTTTGGCTGCTGGCGGAGGTTGGCGCATTAGTGAACCACTCCCTCtaatcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtttatgTCTTCATATTTCTATGCACAGACATCAGGAAAGAATATTTGTCTGCATGTTAccgtctgtgtgtatttttgcaAAATGTCTATTTTTCTAAGTGATTGTCTCAGTTTAACAGTGTAAGAATGTAAAAATACCTCAATCTACTCATCATGCTgctaaagtgaaaaataattccatgaaaaaacaataaaaaattctttaatcctt
>XM_039800303.1
CACAGTTTCGCGGCCGCGAGCTTCGTGACGCGGATGTGATGCGCGTGAACTGACTGATCACCTCGTCAACGCGCAAGAGCAGCAATGGCCGCTTTGGATCGGCGAAATCCTAATCTCGACGATTTTGTCGGATTAAACTGGAGTAGTTGGGTAAATAGGGTGAATATTTTACCATCTGACGCTGGTTCTAATATTGAAGACAGCAGCAAGTATGGGAGCAACCGCTCTGAGACCATGACCCTCAGGAAAGAAGATATGCACACATTTGGTAAATGCCCAGCACACGATGAGATCTATCTGGTGGTGTGCAGCCACTGTGGCCAGGTGGTGAAGCCTCAAGCCTTTGAGAAGCACTGTGAGAGGCGGCATGGTCCTCTTACTAAGATGTGTGGACAGTCTTCTACTTTGGCTCCACAGCAGCGACCTTGCCCTGCTCGCCCTCTTTCAAATCATTCCTCCTCtagagagaggcagaaagaTGGCAGACGTCATGAAGCCAGTGCCCCCGCCTCAGCAGCATCCCTGGTACACCAGCACAGGCCTAGCAAGGCCCAGAAGGAGGCAGTGAGTTTTCCTTCAGTGGAGAAGATCCATCAGGAGAATGCTCCCTTCCCACACCACTCCTCCTCCACGCCTCGCCCCAGGGTCCCTCCATGGCACTCAGGACCCCTGCCCCCTGGCCACTGTTCCTCCTCCACTTCTCCGTCAGAGAGACCCTCAGTGCAGAAGCCCACAGCTGGGCAGTCCAGTGAGTCTCACAGTCCTCTACGGGGAACGAGAACCTACAGCCGAGTTTACAAAAACAGCAATAAGAAAGAATGTGACCTGAACAAACAGTGCAGAGTTCTGGATCcagagggaaagaagctgtGCAGCCAGGAGCGTATATGCAATACTGATTCCATCCACCAGCAGCAGAAAGCATCGGGAAGGACTAAGACCTTTGGTCAGTTGGCAGAGGAGCAGAAAACAGCCTCCGCAGGTCGAGATATAGAGCAGCTTCTTGTCAAATCAAAAGACAAAGAGCAACACCTGGAAGCCTTTAAAGAGAAAATAACTCGGAGCAGTAAAAACTGTCACATTCTCAGGTCCGGGGAACCATCAGAAAGCGCTCCAGAGGAGGAAGGTGACAGCACTGTAGAAGTGCAGGCACAGCCTCAATATCCCGTCAACCCGAGTCTGCTGTCAGGCGAGGAGAGTGAAGACTATGAGCAGGAGGAAGCCACAGACCTGCCTGCCACACCATGGCACCCTAAACCACTCAGGCTATGCACTTTTGGATGCCGCACATTGGGCTGCAGCATCTTCACCTTCGATCGCCGTTTACAACACCTGCGGTTTGCCCTCAGTGCCATGCTGGAGCACCATGTCAGCACACACTTGTGGAAGAAAATGCCGCAAGTATCATCAGGTCTCAGGTCACGTCATGTAACACCTCCAACGGTAGGATCACCGGTCAGGACTGGGGCCAGACCCTCtaactccactggctccctcaGCCTTGAGTCTACCTCACTGGGACAATTGGAAACCAAAACCGGTCAGCACAACTCTCACAGTAACAAACTGCCTTCTTCCATTACATCTGCGAGACTTGGGCCTGGCCGACGGCGCAACCCTGTTGGGCGAGCCAGCAAGTCTCGACTGAGGGAGGAAGAGCTTATGCAAGATGCAAGCGCAGCACAGAAAGCTGCCAAGCTGTCACACAGCAGTGAGGAAAAATCCTCCAAATATATCCGGGATCCTCCCCTCAATGAGAAGGGCCAGCCACACGTCCCCTCCTCTCAAGGACCAGTAAATGGTACCTGTTCTTACGGGAAAAAGCCATGTCCTCCTCTCCACCGCCCCGCCCGCAGCAGAGGGAGGCCCCCAGGCATTCAGCAGAAGGTGGTAGGCTACGAACACAAGGGTCTTGCCCAAAAGCGCAAAGGCAGCAATGAGTCACCGCCCCTTGGCTCCTCACTATCCAGAACCTCTAAGTGTCAACGCTCGGGGACGCCTGTGCTTTGGGCTTGGAGAAAAGATCAGACTCCTGAAGAccCATAAAGAGGACAGCCTTAAAAAGACCACCTGGAACCACTTAGCAAGAGGAAACCTGACAATGATCCAGTCACGCATTTAATCACGCGCTGAGATATTCCTCCAGTTGTCCCTGCTCAGCTCGCGTGCCAGATGTGGGGTTGTTTTCCAGCTGGGGatctgttgcttttttcacAAGTAGCCTATCTTCCCTTAGCGACAGTCCGGTTGGATGGTGCGTTCAACAACAGGCCCGGCAATTTAACTCTTTGGCTGCTGGCGGAGGTTGGCGCATTAGTGAACCACTCCCTCtaatcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtttatgTCTTCATATTTCTATGCACAGACATCAGGAAAGAATATTTGTCTGCATGTTAccgtctgtgtgtatttttgcaAAATGTCTATTTTTCTAAGTGATTGTCTCAGTTTAACAGTGTAAGAATGTAAAAATACCTCAATCTACTCATCATGCTgctaaagtgaaaaataattccatgaaaaaacaataaaaaattctttaatcctt

Function

symbol description
kcnc4 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to several human genes including KCNC4 (potassium voltage-gated channel subfamily C member 4).

NR:

description
PREDICTED: ataxin-7-like protein 2 isoform X1

GO: NA

KEGG:

id description
K11318 ATXN7, SCA7; ataxin-7

RNA

RNA id representative length rna type GC content exon number start site end site
TU69915 False 1749 lncRNA 0.49 2 22991252 23068476
XM_039800302.1 True 2713 mRNA 0.51 11 23062237 23068479
XM_039800303.1 False 2710 mRNA 0.51 11 23062237 23068479

Neighbor

gene id symbol gene type direction distance location
slc6a17 slc6a17,LOC104944562 coding upstream 48377 22919774 ~ 22942875 (+)
slc16a4 slc16a4,LOC102787232 coding upstream 113990 22847985 ~ 22877262 (+)
LOC120559530 LOC104964419,LOC104927136 coding upstream 162704 22826631 ~ 22828548 (+)
LOC120559125 NA coding upstream 167609 22811870 ~ 22823643 (+)
mmp9 mmp9 coding upstream 179781 22806923 ~ 22811471 (+)
gpr61 LOC104942230,LOC103367872,LOC101482146,LOC102303595,LOC100709777 coding downstream 31074 23099553 ~ 23104095 (+)
gnai3 LOC103367862,LOC105931781 coding downstream 41451 23109930 ~ 23126912 (+)
ampd2b LOC103367831,LOC100709506,LOC102200760 coding downstream 77207 23145686 ~ 23167490 (+)
LOC120559793 LOC104960090,LOC107090275,LOC107390786 coding downstream 101755 23170234 ~ 23176129 (+)
LOC120559240 LOC102793838 coding downstream 124907 23193386 ~ 23200479 (+)
G52342 rbm15 non-coding upstream 102565 22884049 ~ 22888687 (+)
G52333 NA non-coding upstream 143956 22834798 ~ 22847296 (+)
G52294 NA non-coding upstream 228698 22750063 ~ 22762554 (+)
G52288 NA non-coding upstream 261697 22726597 ~ 22729555 (+)
G52287 NA non-coding upstream 265121 22725873 ~ 22726131 (+)
G52403 atp5f1 non-coding downstream 72431 23140910 ~ 23192988 (+)
G52461 NA non-coding downstream 153447 23221926 ~ 23246504 (+)
LOC120558323 NA non-coding downstream 196752 23265231 ~ 23275195 (+)
G52509 NA non-coding downstream 378874 23447353 ~ 23447557 (+)
G52569 NA non-coding downstream 617873 23686352 ~ 23687361 (+)
lamtor5 lamtor5,LOC102787529 other upstream 144314 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 428731 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 430924 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 896362 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 930607 22046763 ~ 22060645 (+)
tmem201 tmem201,LOC102777799 other downstream 677886 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 722968 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 1872316 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 1884963 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 2675110 25743589 ~ 25748321 (+)

Expression


Co-expression Network