G52379 (ahcyl1,LOC104942237)


Basic Information

Item Value
gene id G52379
gene name ahcyl1,LOC104942237
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23009177 ~ 23020008 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69923
TATTTCAGCGAGAGCAGCGGCCACCTCATTCTGAGTGGAGTAGATGTTGCAGGCAGTCCAGCGACACTGGGCCCCGAGGGCTACCAGAGTCTCGATCAGGACCTAAAAGGGAACGATACGGATACATGAACAAGTCGCAGAGGTAAAGAAGAGAAGGACAGAACAATCAGTGATCTGCAGCGAAGAGACTGAGCGGACGTACTGCAGTCTGAGCAGTGATATGGGTACAGCCTACTATCTTCGCCCCAGACAGTGGCTTCTCCCCCTGGGCTCTCTTCCTCAAGGAAATCAGGGCAGACATGTCTTGTTCTGCAATTTCAATTTCACGGCGGCCAAATTCGGCCTGCTTGATGTTCTTCACACAGAAGTCACTGCTGCCATTGGTGTTGACCTGCGCTTTGTCCCGGGGGGAGGTTTCATCATCGGAGCTGTCAGTGTAGGATGCAGCTGAGCTGTAGCTGTCTGTAGAGGACTGCGAGATGGACCGAGAGAGGGAGCGGCGGCCAGCCTTGGTGGGGTATTTGCTGAACTCTTGTTTGTCCTCGGTGTTCGCAAACTGGATCTTCTTGACAGATTTCAGAGTAGGGACTGCGGTGAACGCTGCGGAAGGCATTTCCCCAACGTTCATATTCACATCACTGCTGTTCTTGCTGACAGTCAACGCTGAATATTTTTCCGCAACGTTTTCGGTCTCTTTGACATATTTCGTGGCTTGTTTCACCTCCGCCTTGCTGTCCCCAACCGAGTCGGTCATTGCATCCAGGAGATGTTGAGGCTGttactggagaaaaaaaagccgCCGGGTTCTGAATTGAGTTCAGACTAACGTTAGCGTTAAGTTAGCTTTGTCCGTCGTCTTCCTCCTTATGCTTCGTGGCTTAAAATGACCGAACCGTCGCTGAAGCACTTCCACTAGACCTCGGCGCGGAGCAATAAATACACTAGCTAGCTACTTTAAGAGAAACTAAGCTCTTCTCTAGCTTCACTTCTTTGTTAAAAGAGCGGCACCGACACTTGTTTCGGTCCTCCAGGTCTGCTGTCATCCAC

Function

symbol description
ahcyl1 Predicted to enable adenosylhomocysteinase activity. Involved in embryonic morphogenesis. Acts upstream of or within dorsal/ventral pattern formation. Predicted to be active in cytosol. Is expressed in several structures, including hatching gland; nervous system; pectoral fin musculature; polster; and pronephric duct. Orthologous to human AHCYL1 (adenosylhomocysteinase like 1).

NR:

description
PREDICTED: putative adenosylhomocysteinase 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69923 True 1047 lncRNA 0.51 4 23009177 23020008

Neighbor

gene id symbol gene type direction distance location
slc6a17 slc6a17,LOC104944562 coding upstream 66302 22919774 ~ 22942875 (+)
slc16a4 slc16a4,LOC102787232 coding upstream 131915 22847985 ~ 22877262 (+)
LOC120559530 LOC104964419,LOC104927136 coding upstream 180629 22826631 ~ 22828548 (+)
LOC120559125 NA coding upstream 185534 22811870 ~ 22823643 (+)
mmp9 mmp9 coding upstream 197706 22806923 ~ 22811471 (+)
ngrn NA coding downstream 11288 23031296 ~ 23033104 (+)
sypl2b LOC104926818,LOC104942234,LOC103367903 coding downstream 37041 23057049 ~ 23061335 (+)
gpr61 LOC104942230,LOC103367872,LOC101482146,LOC102303595,LOC100709777 coding downstream 79545 23099553 ~ 23104095 (+)
gnai3 LOC103367862,LOC105931781 coding downstream 89922 23109930 ~ 23126912 (+)
ampd2b LOC103367831,LOC100709506,LOC102200760 coding downstream 125678 23145686 ~ 23167490 (+)
G52342 rbm15 non-coding upstream 120490 22884049 ~ 22888687 (+)
G52333 NA non-coding upstream 161881 22834798 ~ 22847296 (+)
G52294 NA non-coding upstream 246623 22750063 ~ 22762554 (+)
G52288 NA non-coding upstream 279622 22726597 ~ 22729555 (+)
G52287 NA non-coding upstream 283046 22725873 ~ 22726131 (+)
G52364 nfya non-coding downstream 798 23020806 ~ 23023328 (+)
G52403 atp5f1 non-coding downstream 120902 23140910 ~ 23192988 (+)
G52461 NA non-coding downstream 201918 23221926 ~ 23246504 (+)
LOC120558323 NA non-coding downstream 245223 23265231 ~ 23275195 (+)
G52509 NA non-coding downstream 427345 23447353 ~ 23447557 (+)
lamtor5 lamtor5,LOC102787529 other upstream 162239 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 446656 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 448849 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 914287 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 948532 22046763 ~ 22060645 (+)
tmem201 tmem201,LOC102777799 other downstream 726357 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 771439 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 1920787 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 1933434 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 2723581 25743589 ~ 25748321 (+)

Expression


Co-expression Network