G52403 (atp5f1)


Basic Information

Item Value
gene id G52403
gene name atp5f1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23140910 ~ 23192988 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69951
tttttttgaagATGGATAAGAGAACCATTTATTTCACCATCAGCTGACGTGTAAATACTGTACACACCCATGACATATTGACAGAGACAAGCTTTAAAGAAGAAATAGTTTATTCTGTAAATAAAAGTGAATGTCTCTTCTTGGGACCATGAGTTGGGGATTAGAGAAGTCTTCTCTGAAGACTTGACAGTTTAGGCTGTAGCTCTGGCCTGTGTGGCCTTGGCCAGAACCTTCAGGTCTGTGATGCACTTGGCGATGCTCTCTTTctcctaaaaaacaaaacaaaacacacagatgtgAAGCCCTGAAGTGTC
>TU69954
TTGAAGATGGATAAGAGAACCATTTATTTCACCATCAGCTGACGTGTAAATACTGTACACACCCATGACATATTGACAGAGACAAGCTTTAAAGAAGAAATAGTTTATTCTGTAAATAAAAGTGAATGTCTCTTCTTGGGACCATGAGTTGGGGATTAGAGAAGTCTTCTCTGAAGACTTGACAGTTTAGGCTGTAGCTCTGGCCTGTGTGGCCTTGGCCAGAACCTTCAGGTCTGTGATGCACTTGGCGATGCTCTCTTTctcCTGCTGAGGAGTGATGCTGCCGACGACACTCTTCTCCACCCAGTTGACCATGTGCTCCTGCTCCATCCGGGTGTGGAGATTCTGCAGGGCCACCTGGTAGTCCAAGCGCCTCTTCACCTCATGGGTCACCATGTGTAGCCTCTCTCTGTAGTTGGTCTCCAACAGCATGGCCACATTGTTCTCTTAGCATCGAAGAGCATTGATCTTCCCTCTGCTCTCCACTGTTCCTTCTTCTCATCCTCAATAGCCTGAGCCAGGCTGGCCATGGCGAGGTCCTTCACCTCCTGAGCCTTGGCCACTTTctcCTCATTCAGTTTGTCAGCAAAAGCTGCAACACTTGGACCAAATTTCTTGACACCATAGATGATGACGGCACCGATGGAGGCGGCAGCAAAGGTCTCATGGTTGATGACGTAGATTTCCTTGGAAAGCATGTAGAGGAGGAGGCCAGTGCCCAGCATGTAGGGTCCTGTCACTCCAGTTTTGGGGTACAGGAGCTGGAAAATCTCCTCTGGGAAGATGCCATGACGGACTTTGCCTCCCTTCTCTGGCAGAGGTGGCACTGGGGCCAGACTCTGGGACGATGTGTGCAGGGAGCGAGACGCCTGGACCAGACCAGCTCCAAGGGGACCGCTGCTTTTCAGGCCATTGGCTGACACAATAACGAGCCTGGACAACATGTTTGAAGGATGAAGTGTCGAGTTCTTGCTACACAGGGCACCCTTGTTTCGGCCTCTTCGTGCCCTTCTGCAAAGAGCCACAAGGCTGGCGGAAACACGAGATATCCTCCTGAAACATCGCGAGAGTAGAGTCGTTCTAGTTTTGGAAGCgaccactagatggcgctttACGCAAAGATATAATTTGTCACTGTCCTGACGTTGAATTGGGATTAATTGAGGTAATGAAG

Function

symbol description
atp5f1 F-type H+-transporting ATPase subunit b

NR:

description
PREDICTED: ATP synthase F(0) complex subunit B1, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69951 False 314 lncRNA 0.41 2 23140910 23187708
TU69954 True 1174 lncRNA 0.51 7 23187400 23192988

Neighbor

gene id symbol gene type direction distance location
gnai3 LOC103367862,LOC105931781 coding upstream 13998 23109930 ~ 23126912 (+)
gpr61 LOC104942230,LOC103367872,LOC101482146,LOC102303595,LOC100709777 coding upstream 36815 23099553 ~ 23104095 (+)
sypl2b LOC104926818,LOC104942234,LOC103367903 coding upstream 79575 23057049 ~ 23061335 (+)
ngrn NA coding upstream 107806 23031296 ~ 23033104 (+)
slc6a17 slc6a17,LOC104944562 coding upstream 198035 22919774 ~ 22942875 (+)
LOC120559240 LOC102793838 coding downstream 398 23193386 ~ 23200479 (+)
dnase1l1l dnase1l3,dnase1l1,LOC100708970 coding downstream 8631 23201619 ~ 23204113 (+)
si:dkey-183p4.10 NA coding downstream 12399 23205387 ~ 23207331 (+)
LOC120559183 NA coding downstream 14935 23207923 ~ 23213985 (+)
gpr157 gpr157 coding downstream 84398 23277386 ~ 23281776 (+)
G52364 nfya non-coding upstream 117582 23020806 ~ 23023328 (+)
G52379 ahcyl1,LOC104942237 non-coding upstream 120902 23009177 ~ 23020008 (+)
G52342 rbm15 non-coding upstream 252223 22884049 ~ 22888687 (+)
G52333 NA non-coding upstream 293614 22834798 ~ 22847296 (+)
G52294 NA non-coding upstream 378356 22750063 ~ 22762554 (+)
G52461 NA non-coding downstream 28938 23221926 ~ 23246504 (+)
LOC120558323 NA non-coding downstream 72243 23265231 ~ 23275195 (+)
G52509 NA non-coding downstream 254365 23447353 ~ 23447557 (+)
G52569 NA non-coding downstream 493364 23686352 ~ 23687361 (+)
G52604 NA non-coding downstream 596460 23789448 ~ 23790522 (+)
atxn7l2b kcnc4 other upstream 72431 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 293972 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 578389 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 580582 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 1046020 22090197 ~ 22094890 (+)
tmem201 tmem201,LOC102777799 other downstream 553377 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 598459 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 1747807 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 1760454 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 2550601 25743589 ~ 25748321 (+)

Expression


Co-expression Network