G52461


Basic Information

Item Value
gene id G52461
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23221926 ~ 23246504 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70027
tgtacacattttatttttccactATGGcatcaaatatattttttatgttcataaAAGCTGAGCTATGAGCTCTACTTTGAATAAAACATGAAGTTCAAGCGGGTGAATACTTTTTATAGGCATGATATGTGACTGTATGGGTAGCAGACATTACTGAAAAAAACTAATACATCCTTACAGGACAATGATGATAATGATTAGAAAACATCTTGATGTTCACAGCAAAACAAACTACCTTATGTTTTGTTAAATAGAAAGCACAGGAGAGCCTTTACTTTATATTAGAAATTTAGAATGGTCTCAAAAGTAGGATAAACTTAAATTCCTTAAAGAGAGCTCTTACTGaggaaattttttttcttttcaaatgttttttttttcagccaaaTCTTATCATCAGCAGGTAAGAACTTCCTGATAAATTCAGCTGAATTCGGGATAAAATGATTTAATAACTGAACCAGCCGATTAGTCCCTcacataaccctaacccttgtgCTTTCATCACAGTGAAGATAGAGGTTTGTATTAACACCATTCCTTCAGTATTCAGGTCAACCAGCAACTGATGCAGTTTCTTGATGCATTTTATTGAGCCATTGGTCAAATAAGCATTCAAGTTCTCATTGTATTGTAAAAGGTGACTATCTTTTTCCCCACAAAGAAAACATACAGATAAGCCTGtattacatgtatgtatgtatgtatgtatgtatgtatgtatgtatatatgaacatgTATTTTTGAAGCAGAAATCTCAAAAATGATCTGTTAGGTCATTACATTGCTTCCCTTCATTAACTAAAACGGTCAACCCTCGCAGTCATGTGTGTTGGTACATTTACCACTAAAATAAGGAAACAAACACGgtcataaaataacaaaaaataaaataagttagTTAACTTAACACTAGTACTCTAAGTAGATGACCTTTATCACAGGTTTGGAGTTTTAATAAGTACCATGACTttggttatttaaaaaaaaaaaaaaaaaaactccaaccAACAAGctttcaataaaataatgtttttagcTCTTTGGATAACAGTACAACCTGCTTTAGTTCCACCATAAAAGTCTCTGTAGCACCACATTAAAACAACATATGTGCTGCATTCTCAAAAGTCTCTTTCTCAGCGTGTATTCTTGGGCTCGGTTAGGCATCCATTGTTTTGTCAGGAACTTCTGAGCATTTTCTTCACTTGGACTCTCCCAGCAGATGGATAATGAGTTCATACGTGGAGAGGACGATGGCTGTGTTAGGGATTTGTCTAATTAGCTGTGGAATGAGTCCTCTATAAAAAGCTGCATAGCCTTCCTCCACCGCTATTAACCTCCCCGTCTGGAAGAAATACTTGTACTTGCTGCCTTCCTCACGCAGCCTTGTCCGAATGACCTCTGTGGAGACAAAACGATAAGTCATTTAAATTAATACTTCGCTCTGACATtaggttgttgtgttgtgtggatGTTGGCGTTTACCGTGTGGATAAGCAATGCAGGACGCACAACCCTTTGAAAAAGCAGCTGCCATCATCAGACCCAGGAAGTCTGACGCTCCTTTCTCCTTTTCACCGTTCCGGGAGGTGAATTGGCTCTTGGCGAGGTGTTTCTTCAACGTCTCATAGATGACGAAGCAGATCATGGTCTCTGAGATGCCGGCATAAGATGCAGTTAGGCCTCGGTAGAAGCCCCGAATCCCTTCCGATTTGTAAACATAGCGGGCACACTGCAGTGCATTcatcttcttctctcctttgGCTCTAAAAGTCAAACAGGTCAAGCTCATTAGTGCCAAaaccacttttctttttttttttttcttttttttttttataaaaaaggacATGATTGTATTGAAAGATTTCCTGCAGATGCATGCTACAAATAATCACAGTGACATTATCCTAAAATTCCTGCTGATGTTGCTCCTGACGGATGCCTTGATGGTAAGCAATGGGGTAAACTTCCATATCGCAGAGAAACCTGATAATGCAGTGAGTGGTCGGAGCTGCTCTTCAGCTGCCCAAAAGTGCATTCCTCCACACTGCACTACAGACTCTCTATGGAGTGGTCAGCATCTCTTCTGCGTTGTGTGTAATGCAATTTTATTTAgtatccattaaaaaaaaaaaaaaaaaaaaacttctaaaaGCAACTAGGATTTCATGTTATAATTCTCAATTTGAGAGGATGTACaggttgatgtgtgtgtgctgccacCTTGTGGTCAGAGGCTAGCAGTGTATTTCTGCACCAACTCTCAAGTTTAAATCCCATCACACAATTTAGTTTTAGCACAACCAATAACGCATCAATTTAAAAGGCTACAAGATATAAATTCATTACCATAAAGTCTGCAGGTCACAGCAGAGAAACCGACCACATATGCCACATTAACCTACAAACTGGAGGAGGTACACCAACATGGTGACTGTCAGGGCATCGCCTGGATCAGCATGTGCATAGTGCTCAGTGATTCCTGATTTTATAAAGTTAGAGAATACAATTGCAAAGAGTCATAAAAACAGGATAAGAAACTCAAAAAAGGTGTCCAGCTACTGACACAGAAGCATACTTGAAGGCTGAGTCAGTACTGGAGGCTAGAGCAATGTTGTCAAACGGGTTCAACCCTAGAAGGATCCCAGAGAAACATGTGAAAGAGACGAAGGTGTGCCGAGCGTGCGGTCACCGTCAGCGCCGTCATTGGTAGAGCAGGTAGTTCTTAAGAGAGGCCGGCAGTGGCAGTCTATGGATTTCACCCAGACGGTCTCTTCCTAATGCCACCCTCACTGAACGCCGACACAGATCCATCAGAGAGAGGGGTTCAGCTAGGGGGAGGAGACAAGAGAGGTGAGGTGTTATGTGTTAGCAATGGCTGAATCTCATTTCAGGAGTGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70027 True 2909 lncRNA 0.40 3 23221926 23246504

Neighbor

gene id symbol gene type direction distance location
LOC120559183 NA coding upstream 7941 23207923 ~ 23213985 (+)
si:dkey-183p4.10 NA coding upstream 14595 23205387 ~ 23207331 (+)
dnase1l1l dnase1l3,dnase1l1,LOC100708970 coding upstream 17813 23201619 ~ 23204113 (+)
LOC120559240 LOC102793838 coding upstream 21447 23193386 ~ 23200479 (+)
LOC120559793 LOC104960090,LOC107090275,LOC107390786 coding upstream 45797 23170234 ~ 23176129 (+)
gpr157 gpr157 coding downstream 30882 23277386 ~ 23281776 (+)
LOC120558415 slc2a5 coding downstream 38415 23284919 ~ 23292578 (+)
eno1a eno1 coding downstream 60200 23306704 ~ 23319684 (+)
rerea rere coding downstream 107454 23353958 ~ 23445765 (+)
samd11 samd11 coding downstream 255818 23502322 ~ 23557887 (+)
G52403 atp5f1 non-coding upstream 28938 23140910 ~ 23192988 (+)
G52364 nfya non-coding upstream 198598 23020806 ~ 23023328 (+)
G52379 ahcyl1,LOC104942237 non-coding upstream 201918 23009177 ~ 23020008 (+)
G52342 rbm15 non-coding upstream 333239 22884049 ~ 22888687 (+)
G52333 NA non-coding upstream 374630 22834798 ~ 22847296 (+)
LOC120558323 NA non-coding downstream 18727 23265231 ~ 23275195 (+)
G52509 NA non-coding downstream 200849 23447353 ~ 23447557 (+)
G52569 NA non-coding downstream 439848 23686352 ~ 23687361 (+)
G52604 NA non-coding downstream 542944 23789448 ~ 23790522 (+)
G52611 NA non-coding downstream 591188 23837692 ~ 23837962 (+)
atxn7l2b kcnc4 other upstream 153447 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 374988 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 659405 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 661598 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 1127036 22090197 ~ 22094890 (+)
tmem201 tmem201,LOC102777799 other downstream 499861 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 544943 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 1694291 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 1706938 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 2497085 25743589 ~ 25748321 (+)

Expression


Co-expression Network