LOC120558323


Basic Information

Item Value
gene id LOC120558323
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23265231 ~ 23275195 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70058
GCAGTGGGGGAACACTGCTGAGCTGTGCAGTTTATGCTGCCAGCAAGCGTGCAAAGAAGAGGAGGGGGAGCCAGCGCgtacaggaggaggaggagtaagggagagagatggaggagaggagagagagtgcAAACAATGTCATTCTGTTCAGGAGGCAATGCTGCAGTCAACTTTGCAGTGCCATGAAAGCACATCACCAGCAACCAAGAGGCTCAGAGTGAGTGCAGAGAAGTTTTCCTCCTCTCCACCTTGGGTGAGATGCCGTCCGGGACTCATCTGTAGGTCATCAGTCCGTCGACGGGCTGCAGTGGAGAGCAACACCAGTGATGTACAGTTCGGTGCTTTAGAGATGCTCAGGCAGCCAGATTGAGACCATATTGTAGCAGGAGCAGGCTCAAACACCCAGTCCAGGCTGTTGGTGGCGTGTTGGAACATGCCTTGACTTGTTGTACTGCCTGAgtcaggcagagagacagacagccacagagagagagggagagagagaagatgctTGTGGTCAACAGTTTGCCAGTGTGAAGTGACCCACACAAAGAGAGAGCCCTGCTGCAACATGGACAGACTCCTGTTGATGTCAACACCAGAGTGCACTCCCTGGAGACGAGCGTGGATGTAGGAGATCTACTGCTGCCTCGCTGCTTGAGCTTTTGGCTGTTGGCATGGGACCACGCCACCCCCGGGGGCTTTTAGTGTGAGGCCATTGCCTTTCAACCACCACGGCCACCAGGAAGCTGGGCATGAAAAGTGTGAGCGTCCGTAGTGCCAGACTCACAGGTGGAAGTGTACGGCAAATACCAGCCAGGATCCTGCTCAGGAGGAGGCAGGCAGAGGGGCAGGCGGTTGGACAGGCGGTTGGACGCGGCTGCTGTGGGTGTTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGAGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAATTCTTCGCAATAGAGGCCCTGGGATCAGAGCCATCACAACGGGGAGGACAAAATGCGTATCAGCATTGTGGCAAACATGGATCCTGCTGCTACTGtaagtttttaacatttttccgGACAATGAAATCAACAACCGCTGAGGACCTGATAAAGAATTAACTGAAGATAGATCACCTGAGTGCATGGCCTTTTTGTTAACAGCCTCTACAATATTTACGATTGTATCAAACCAATCAAACTGCTTCACAATGTGTTGTACTTTTGTCGTCCTCTGCTGCCATCTTGTGAATGAAAGTAACCTCCCAGCatgcttttgttcatttaacactgcagcaatttgtaaaaaaaaaaaaaactacaacaatctaaaaaaatcCCTTTCATTAAGAAAATATAGCTCGGCTTACCATGACTtcagattcattttttttttcagttgtaTGTTACTTTTGTCAC
>TU70061
GCAGTGGGGGAACACTGCTGAGCTGTGCAGTTTATGCTGCCAGCAAGCGTGCAAAGAAGAGGAGGGGGAGCCAGCGCgtacaggaggaggaggagtaagggagagagatggaggagaggagagagagtgcAAACAATGTCATTCTGTTCAGGAGGCAATGCTGCAGTCAACTTTGCAGTGCCATGAAAGCACATCACCAGCAACCAAGAGGCTCAGAGTGAGTGCAGAGAAGTTTTCCTCCTCTCCACCTTGGGTGAGATGCCGTCCGGGACTCATCTGTCATCAGTCCGTCGACGGGCTGCAGTGGAGAGCAACACCAGTGATGTACAGTTCGGTGCTTTAGAGATGCTCAGGCAGCCAGATTGAGACCATATTGTAGCAGGAGCAGGCTCAAACACCCAGTCCAGGCTGTTGGTGGCGTGTTGGAACATGCCTTGACTTGTTGTACTGCCTGAgtcaggcagagagacagacagccacagagagagagggagagagagaagatgctTGTGGTCAACAGTTTGCCAGTGTGAAGTGACCCACACAAAGAGAGAGCCCTGCTGCAACATGGACAGACTCCTGTTGATGTCAACACCAGAGTGCACTCCCTGGAGACGAGCGTGGATGTAGGAGATCTACTGCTGCCTCGCTGCTTGAGCTTTTGGCTGTTGGCATGGGACCACGCCACCCCCGGGGGCTTTTAGTGTGAGGCCATTGCCTTTCAACCACCACGGCCACCAGGAAGCTGGGCATGAAAAGTGTGAGCGTCCGTAGTGCCAGACTCACAGGTGGAAGTGTACGGCAAATACCAGCCAGGATCCTGCTCAGGAGGAGGCAGGCAGAGGGGCAGGCGGTTGGACAGGCGGTTGGACGCGGCTGCTGTGGGTGTTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGAGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAATTCTTCGCAATAGAGGCCCTGGGATCAGAGCCATCACAACGGGGAGGACAAAATGCGTATCAGCATTGTGGCAAACATGGATCCTGCTGCTACTGtaagtttttaacatttttccgGACAATGAAATCAACAACCGCTGAGGACCTGATAAAGAATTAACTGAAGATAGATCACCTGAGTGCATGGCCTTTTTGTTAACAGCCTCTACAATATTTACGATTGTATCAAACCAATCAAACTGCTTCACAATGTGTTGTACTTTTGTCGTCCTCTGCTGCCATCTTGTGAATGAAAGTAACCTCCCAGCatgcttttgttcatttaacactgcagcaatttgtaaaaaaaaaaaaaactacaacaatctaaaaaaatcCCTTTCATTAAGAAAATATAGCTCGGCTTACCATGACTtcagattcattttttttttcagttgtaTGTTACTTTTGTCAC
>XR_005639092.1
gggagagagatggaggagaggagagagagtgcAAACAATGTCATTCTGTTCAGGAGGCAATGCTGCAGTCAACTTTGCAGTGCCATGAAAGCACATCACCAGCAACCAAGAGGCTCAGAGTGAGTGCAGAGAAGTTTTCCTCCTCTCCACCTTGGGTGAGATGCCGTCCGGGACTCATCTGTAGGTCATCAGTCCGTCGACGGGCTGCAGTGGAGAGCAACACCAGTGATGTACAGTTCGGTGCTTTAGAGATGCTCAGGCAGCCAGATTGAGACCATATTGTAGCAGGAGCAGGCTCAAACACCCAGTCCAGGCTGTTGGTGGCGTGTTGGAACATGCCTTGACTTGTTGTACTGCCTGAgtcaggcagagagacagacagccacagagagagagggagagagagaagatgctTGTGGTCAACAGTTTGCCAGTGTGAAGTGACCCACACAAAGAGAGAGCCCTGCTGCAACATGGACAGACTCCTGTTGATGTCAACACCAGAGTGCACTCCCTGGAGACGAGCGTGGATGTAGGAGATCTACTGCTGCCTCGCTGCTTGAGCTTTTGGCTGTTGGCATGGGACCACGCCACCCCCGGGGGCTTTTAGTGTGAGGCCATTGCCTTTCAACCACCACGGCCACCAGGAAGCTGGGCATGAAAAGTGTGAGCGTCCGTAGTGCCAGACTCACAGGTGGAAGTGTACGGCAAATACCAGCCAGGATCCTGCTCAGGAGGAGGCAGGCAGAGGGGCAGGCGGTTGGACAGGCGGTTGGACGCGGCTGCTGTGGGTGTTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGAGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAATTCTTCGCAATAGAGGCCCTGGGATCAGAGCCATCACAACGGGGAGGACAAAATGCGTATCAGCATTGTGGCAAACATGGATCCTGCTGCTACTGtaagtttttaacatttttccgGACAATGAAATCAACAACCGCTGAGGACCTGATAAAGAATTAACTGAAGATAGATCACCTGAGTGCATGGCCTTTTTGTTAACAGCCTCTACAATATTTACGATTGTATCAAACCAATCAAACTGCTTCACAATGTGTTGTACTTTTGTCGTCCTCTGCTGCCATCTTGTGAATGAAAGTAACCTCCCAGCatgcttttgttcatttaacactgcagcaatttgtaaaaaaaaaaaaaactacaacaatctaaaaaaatcCCTTTCATTAAGAAAATATAGCTCGG
>XR_005639093.1
gggagagagatggaggagaggagagagagtgcAAACAATGTCATTCTGTTCAGGAGGCAATGCTGCAGTCAACTTTGCAGTGCCATGAAAGCACATCACCAGCAACCAAGAGGCTCAGAGTGAGTGCAGAGAAGTTTTCCTCCTCTCCACCTTGGGTGAGATGCCGTCCGGGACTCATCTGTCATCAGTCCGTCGACGGGCTGCAGTGGAGAGCAACACCAGTGATGTACAGTTCGGTGCTTTAGAGATGCTCAGGCAGCCAGATTGAGACCATATTGTAGCAGGAGCAGGCTCAAACACCCAGTCCAGGCTGTTGGTGGCGTGTTGGAACATGCCTTGACTTGTTGTACTGCCTGAgtcaggcagagagacagacagccacagagagagagggagagagagaagatgctTGTGGTCAACAGTTTGCCAGTGTGAAGTGACCCACACAAAGAGAGAGCCCTGCTGCAACATGGACAGACTCCTGTTGATGTCAACACCAGAGTGCACTCCCTGGAGACGAGCGTGGATGTAGGAGATCTACTGCTGCCTCGCTGCTTGAGCTTTTGGCTGTTGGCATGGGACCACGCCACCCCCGGGGGCTTTTAGTGTGAGGCCATTGCCTTTCAACCACCACGGCCACCAGGAAGCTGGGCATGAAAAGTGTGAGCGTCCGTAGTGCCAGACTCACAGGTGGAAGTGTACGGCAAATACCAGCCAGGATCCTGCTCAGGAGGAGGCAGGCAGAGGGGCAGGCGGTTGGACAGGCGGTTGGACGCGGCTGCTGTGGGTGTTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGAGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAATTCTTCGCAATAGAGGCCCTGGGATCAGAGCCATCACAACGGGGAGGACAAAATGCGTATCAGCATTGTGGCAAACATGGATCCTGCTGCTACTGtaagtttttaacatttttccgGACAATGAAATCAACAACCGCTGAGGACCTGATAAAGAATTAACTGAAGATAGATCACCTGAGTGCATGGCCTTTTTGTTAACAGCCTCTACAATATTTACGATTGTATCAAACCAATCAAACTGCTTCACAATGTGTTGTACTTTTGTCGTCCTCTGCTGCCATCTTGTGAATGAAAGTAACCTCCCAGCatgcttttgttcatttaacactgcagcaatttgtaaaaaaaaaaaaaactacaacaatctaaaaaaatcCCTTTCATTAAGAAAATATAGCTCGG

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU70058 True 1423 lncRNA 0.50 4 23265231 23275195
TU70061 False 1419 lncRNA 0.50 4 23265231 23275195
XR_005639092.1 False 1271 lncRNA 0.50 4 23265329 23275141
XR_005639093.1 False 1267 lncRNA 0.50 4 23265329 23275141

Neighbor

gene id symbol gene type direction distance location
LOC120559183 NA coding upstream 51246 23207923 ~ 23213985 (+)
si:dkey-183p4.10 NA coding upstream 57900 23205387 ~ 23207331 (+)
dnase1l1l dnase1l3,dnase1l1,LOC100708970 coding upstream 61118 23201619 ~ 23204113 (+)
LOC120559240 LOC102793838 coding upstream 64752 23193386 ~ 23200479 (+)
LOC120559793 LOC104960090,LOC107090275,LOC107390786 coding upstream 89102 23170234 ~ 23176129 (+)
gpr157 gpr157 coding downstream 2191 23277386 ~ 23281776 (+)
LOC120558415 slc2a5 coding downstream 9724 23284919 ~ 23292578 (+)
eno1a eno1 coding downstream 31509 23306704 ~ 23319684 (+)
rerea rere coding downstream 78763 23353958 ~ 23445765 (+)
samd11 samd11 coding downstream 227127 23502322 ~ 23557887 (+)
G52461 NA non-coding upstream 18727 23221926 ~ 23246504 (+)
G52403 atp5f1 non-coding upstream 72243 23140910 ~ 23192988 (+)
G52364 nfya non-coding upstream 241903 23020806 ~ 23023328 (+)
G52379 ahcyl1,LOC104942237 non-coding upstream 245223 23009177 ~ 23020008 (+)
G52342 rbm15 non-coding upstream 376544 22884049 ~ 22888687 (+)
G52509 NA non-coding downstream 172158 23447353 ~ 23447557 (+)
G52569 NA non-coding downstream 411157 23686352 ~ 23687361 (+)
G52604 NA non-coding downstream 514253 23789448 ~ 23790522 (+)
G52611 NA non-coding downstream 562497 23837692 ~ 23837962 (+)
G52628 tardbp,LOC106566965 non-coding downstream 734601 24009796 ~ 24011101 (+)
atxn7l2b kcnc4 other upstream 196752 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 418293 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 702710 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 704903 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 1170341 22090197 ~ 22094890 (+)
tmem201 tmem201,LOC102777799 other downstream 471170 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 516252 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 1665600 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 1678247 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 2468394 25743589 ~ 25748321 (+)

Expression


Co-expression Network