G52569


Basic Information

Item Value
gene id G52569
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23686352 ~ 23687361 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70174
aattaacaagatgcaaaacacttttaccagtcccgaaacaaatttacaaatgacagattcttcacggaaagggaatgtaccacataccggaagtgatgaggtgttgttggtgagcgcagtcaatttgtgttgttgtgagtgagtatatggcgtgaatgaagtttatggtgactttacgtgtggtcggtgtttggagtttttatatgacgcggacctgacggaaacattggaaaaacagggaacgtatcgacagccgcggccggatcgaagctacagcaggggggcagctgagtccgtctgcagctgcaggacctggagctcactgcccattcctgggagccaaaaccgacaccacgcagctggagacccaggccgtattgctgggcccgctggagggaagggaagcccgggagaatcagatccaggactaaacggagcggactgtcacagcctgctgaagtttaaatcacaggtttcctaaagggagtctggcgggactcggactgtggacgacgaaacacgacttaaagtctcgttaaataaataaatacatgcagaaataaatgaatcattagtgggggagtgagcctggacatttcagtctgtttaaacttcactttgaagcagaacctcttagttcagaagggtgaagtttccgtttgtac
>TU70175
ccggaagtgatgaggtgttgttggtgagcgcagtcaatttgtgttgttgtgagtgagtatatggcgtgaatgaagtttatggtgactttacgtgtggtcggtgtttggagtttttatatgacgcggacctgacggaaacattggaaaaacagggaacgtatcgacagccgcggccggatcgaagctacagcaggggggcagctgagtccgtctgcagctgcaggacctggagctcactgcccattcctgggagccaaaaccgacaccacgcagctggagacccaggccgtattgctgggcccgctggagggaagggaagcccgggagaatcagatccaggactaaacggagcggactgtcacagcctgctgaagtttaaatcacaggtttcctaaagggagtctggcgggactcggactgtggacgacgaaacacgacttaaagtctcgttaaataaataaatacatgcagaaataaatgaatcattagtgggggagtgagcctggacatttcagtctgtttaaacttcactttgaagcagaacctcttagttcagaagggtgaagtttccgtttgtac
>TU70181
ccggaagtgatgaggtgttgttggtgagcgcagtcaatttgtgttgttgtgagtgagtatatggcgtgaatgaagtttatggtgactttacgtgtggtcggtgtttggagtttttatatgacgcggacctgacggaaacattggaaaaacagggaacgtatcgacagccgcggccggatcgaagctacagcaggggggcagctgagtccgtctgcagctgcaggacctggagctcactgcccattcctgggagccaaaaccgacaccacgcagctggagacccaggccgtattgctgggcccgctggagggaagggaagcccgggagaatcagatccaggactaaacggagcggactgtcacagcctgctgaagtttaaatcacaggtttcctaaagggagtctggcgggactcggactgtggacgacgaaacacgacttaaagtctcgttaaataaataaatacatgcagaaataaatgaatcattagtgggggagtgagcctggacatttcagtctgtttaaacttcactttgaagcagaacctcttagttcagaagggtgaagtttccgtttgtactcatatctgtgaactgattataataaatattctttgtattaacacattaattagtctctttgtctttttgtttaaaaaaactagaacatcgcatgagattttgacgatttatagtgattttatttccgttagacctttgcctacattgacgctgatgcattaaggacggcccatagacagtatataaggcagtgcctcccctgttccaagatggcggctctattgacgcattcgatccataactgccgtagtcatggcgacatgtatacaaaacctcatcacttccggtatgtggtacattccctttccgtgaagaatctgtcatttgtaaatttgtttcgggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70174 False 665 lncRNA 0.49 1 23686352 23687016
TU70175 False 579 lncRNA 0.51 1 23686438 23687016
TU70181 True 924 lncRNA 0.46 1 23686438 23687361

Neighbor

gene id symbol gene type direction distance location
plekhn1 plekhn1 coding upstream 57432 23613688 ~ 23628920 (+)
klhl17 klhl17,LOC106572137 coding upstream 84704 23588381 ~ 23601648 (+)
samd11 samd11 coding upstream 128465 23502322 ~ 23557887 (+)
rerea rere coding upstream 240587 23353958 ~ 23445765 (+)
eno1a eno1 coding upstream 366668 23306704 ~ 23319684 (+)
foxl2l NA coding downstream 56711 23744072 ~ 23745466 (+)
pik3cd pik3cd,LOC104956376 coding downstream 83270 23770631 ~ 23789093 (+)
clstn1 clstn1 coding downstream 162253 23849614 ~ 23890973 (+)
nmnat1 nmnat1 coding downstream 206852 23894213 ~ 23904039 (+)
rbp7a rbp7 coding downstream 216604 23903965 ~ 23905818 (+)
G52509 NA non-coding upstream 238795 23447353 ~ 23447557 (+)
LOC120558323 NA non-coding upstream 411157 23265231 ~ 23275195 (+)
G52461 NA non-coding upstream 439848 23221926 ~ 23246504 (+)
G52403 atp5f1 non-coding upstream 493364 23140910 ~ 23192988 (+)
G52364 nfya non-coding upstream 663024 23020806 ~ 23023328 (+)
G52604 NA non-coding downstream 102087 23789448 ~ 23790522 (+)
G52611 NA non-coding downstream 150331 23837692 ~ 23837962 (+)
G52628 tardbp,LOC106566965 non-coding downstream 322435 24009796 ~ 24011101 (+)
G52629 NA non-coding downstream 325602 24012963 ~ 24013301 (+)
LOC120558580 NA non-coding downstream 373702 24061063 ~ 24074008 (+)
atxn7l2b kcnc4 other upstream 617873 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 839414 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 1123831 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 1126024 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 1591462 22090197 ~ 22094890 (+)
tmem201 tmem201,LOC102777799 other downstream 59004 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 104086 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 1253434 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 1266081 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 2056228 25743589 ~ 25748321 (+)

Expression


Co-expression Network