ctnnbip1 (ctnnbip1)


Basic Information

Item Value
gene id ctnnbip1
gene name ctnnbip1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23791447 ~ 23814406 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70231
tgtgtgtgtgtgtgtgtgtgtgatcattgAACTTGCTTTGTTTTGATTTTCAGCATGCTGTTCAGTGTGACTAGGATCGATTTCTCTTTTTACTGTGATGACCTGACGTTGCCtaattaacctttttttttttggccttgcttttgtatttcattttccTCTCAGTCATCATTGATTAGTTGGTTTGGTTTTGTATGGCTGCTGACCATGTATTGACTTAATGCTTCCAAATCCTATACCAACTGAACCATTAAAGATATTTTAAACAGTGAAAA
>TU70233
AAGCTCTGCGACTGGAGGGATGTGACCCCGGAACAGGACGCCCTCCTACAACAACACACCATTCAAACAGAgcatagaagaaagaaaagctGGACCAGGAGGGAGCCACAGGAGCAGGGGGCATGAACCGCGAGGAGGCCCCAGGGAAGTCTCCTGAAGACATGTACATCCAACAGAAAGTGCGGGTCCTGCTCATGCTAAAGAAAATGGGATCAAATCTTACGCCCAGTGAAGAGGCTTTTCTCCGGAATTACGCAGGTGTGGTCCACAGTCAGATGAGCCAGCTACCACAGCACAACATAGACCAGGGT
>XM_039801523.1
CAGGACTCTCGCTGCGTTGAGTCAGTTCGCCGAAGCTCTGCGACTGGAGGGATGTGACCCCGGAACAGGACGCCCTCCTACAACAACACACCATTCAAACAGAgcatagaagaaagaaaagctGGACCAGGAGGGAGCCACAGGAGCAGGGGGCATGAACCGCGAGGAGGCCCCAGGGAAGTCTCCTGAAGACATGTACATCCAACAGAAAGTGCGGGTCCTGCTCATGCTAAAGAAAATGGGATCAAATCTTACGCCCAGTGAAGAGGCTTTTCTCCGGAATTACGCAGGTGTGGTCCACAGTCAGATGAGCCAGCTACCACAGCACAACATAGACCAGGGTGCAGAGGACGTGGTGATGGCGTTCTCACGGTCAGAGACGGAGGATCGCCGACAGTGACCCTGGCCCCCCCACCCCAATTCCACCCCACTGCATCCCTCCCCACCCCCGTCCCACCCCACACCTGATCCACAGCAACCCAAACTCCACAAACCTGACACTGATGAGCTCAGGAGAGGATGGGCACCCGGGAGGGAcagaagaggaggggagagacaCCAGGAGGTGGCTGCCTCGCTCTCTCCCATCCCTGACTCCTCCTCATACAAGCTGGCACACCATTACCTGAGATGCACTCAAGTGCTTCACTGTGGGTTGAAGCCTCGGCAACAAGGCAGTCAGTGAAAACACTCACAAATTGTGGGATGAATATCAAatgtagtcttttttttttttttttttaattattattattttgtctgggtgggttagtttagttttgtattattttgtctGTTGAGACTTTAGGCAGTGTTACATGTTATATCTGCTGTGGTCACTGGAGGAGGCGACCAGTCAGCAGCTGATTGAAGCAAAGAGAAATATAGTTTTGGTCAAGCAGCGAGTGTGATGATTGGTCGTGTTAGGGGAGAGattcttttaattatttctgCTTACCCTAATGGGGCTGAAATTGTTTTTTGATTTAGCTATtgtgttataaaagcttttgTATTCTGTCACACagggggcctcatttataaacattttgtgtgtaaaagaggAGGCGTGAAAGATGGGTATGCCATCTCCCACGCAGCTGTTGGGATGTTAGTGGAGAGCATCAACACGTCTCCTGGAACCTGCACGCTGAAGGCAAAGTAGTGATATAAAATCTAATGTATTAATAACTCAGACAAATGATTTCACCTAATATAAAATTCTGCTGCAgcgtagtcttgcattgccagacctatctccacagctggagtatggtctggctacacagTATATCTATTCTGGGATGGAGCGTAAGacactctggcttgtttgtgttttttcaaaCCAATCCCAACCGTCCTGGGCAGCACTAAGCCCTGCAGCAATGGTGCCCCATGCAAAATAGTTAGCGGAGATAATGGAAGGGGAGAGACATCGGTCAGGCTTAATCCAAGCAATGGACATCCATTGAGCCAGACTAAGTGCAGTGAGCTCCAATATGCAGTCATGTTTTTTTGGtgttatacttttattttagaATAATTTGACTTTCTGGTCACGCAGCGCTCACTGCTGCTGTGACCCGCTGATTGTCTCTTTATTGGTCAAActagaaatacaaacaaacaccaAACAGTTAATCTAACTGACTCAAGATCTCATTTCTCTTGGATGTGCCGTCTGACCTTTTGTTCACGTGCAAGTATTAGATTGACATGCTGATTGATGTGTGTATTAACACTCACAACAGACCTGTCATTAATCACATAATGTTTAATTATGGGAGTTAACAGCGCAGGATGACGAGGCCAGTGACATGATCAACGTGTAAATGAAAAACTGCGttaaggtgagtgtattttCTTCTCGACaaatctacgcacagttttataaatgggGCCCCTGTTGTTGTTCTGCTGCTTTATTTTGAACCATAGGCTGTTGAGAGTGCAGCAATGCTTTTCTCTTGAGGAAAGCGTAAGAATTAAAGACACTAGCAGACATAATCACATGAAACACAGCTGTATACACATTCTCCCCAAACACTGGTTTTGGGTTAttgtgactttttctttttttttttttaattgtacagATAGTTGGGAAAATACAATAATGAATTGATCGTGccaattgtattttattttttattttttttaatctgtgagataaaaaaaaataacctaaTGATTTAAGAAAATTGATAAAGAGACGAGCCGTAGTTgtaatttattgtttattgaatTGACTTCCTTGAACACATCATTAAAGAAGGAGAACCAGTAGATAGTTTAATGTCCTCATCAGTGGCTCTTTGTTCACACTAAAATCACACACTCTAATTTTTAACTACCTGTAACTAAACACGTGAAGCCAAACATAAGAGCTGTGTGCTAGTTCTGACTGTACTTTATCTCTTGCACTATTATCAATGGGATATttgcaaaaaatacattttgatatttAGGGCAGAGATTCTATGTTTGGTTCAATACATGAAAGAAGACTTTGTaaccatgtgttttttttattcctttactgatttcaacaacaacaaaaaatctcTTGTGTTAATTGACTCAACTGGAAATAGCTCAAAGGAATATTTGTTAACAACCAACATGTTTTTTCTAGTAACATGCTCaatatttaatgtgtttttaagtATGGTTTGTTAACTTGTATAACTTAAAAATAATTGTAACGTAATGTTTTGAAGCCAAGCATGTCTGCCTCGTGGTTTATAATGTTCATTCTAGTGGAGCCGAGGATTTTGGAAGCCTTGCCACGTTAACCATTGTTTGTACATTCTTGACATTTGTGGAAGCTACTTgctatttttaaatgtttcagaaaaaaaaaaaaaaaacattattttgtatGGGTAACATGTTATCCATTATTTGTTGTTGGCAATAACTTCTATTTGAATTTCCTCAGCAATCATTGCTATGTAATCAGCCAACAGATATATCATGCTGTCCGCTTATGGCTATGACAAAGACatttgtctttttatgtttacttttgttttaaaaCATTCTTTATTTGTCTATGCAttgttttcttcctctctctaaaAGGCATCTTACTGTACATTCTACCTGTCCGGGTTGTTCTACAGCCTTCattcaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcattgAACTTGCTTTGTTTTGATTTTCAGCATGCTGTTCAGTGTGACTAGGATCGATTTCTCTTTTTACTGTGATGACCTGACGTTGCCtaattaacctttttttttttggccttgcttttgtatttcattttccTCTCAGTCATCATTGATTAGTTGGTTTGGTTTTGTATGGCTGCTGACCATGTATTGACTTAATGCTTCCAAATCCTATACCAACTGAACCATTAAAGATATTTTAAACAGTGAAAA

Function

symbol description
ctnnbip1 Predicted to enable beta-catenin binding activity. Predicted to be involved in negative regulation of Wnt signaling pathway. Predicted to be part of beta-catenin destruction complex. Predicted to be active in cytosol and nucleus. Is expressed in central nervous system and optic tectum. Orthologous to human CTNNBIP1 (catenin beta interacting protein 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0001658 branching involved in ureteric bud morphogenesis biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K04493 ICAT, CTNNBIP1; beta-catenin-interacting protein 1 (inhibitor of beta-catenin and Tcf-4)

RNA

RNA id representative length rna type GC content exon number start site end site
TU70231 False 275 lncRNA 0.36 1 23814132 23814406
TU70233 False 311 lncRNA 0.54 3 23791479 23800868
XM_039801523.1 True 3547 mRNA 0.41 4 23791447 23814406

Neighbor

gene id symbol gene type direction distance location
pik3cd pik3cd,LOC104956376 coding upstream 2354 23770631 ~ 23789093 (+)
foxl2l NA coding upstream 45981 23744072 ~ 23745466 (+)
plekhn1 plekhn1 coding upstream 162527 23613688 ~ 23628920 (+)
klhl17 klhl17,LOC106572137 coding upstream 189799 23588381 ~ 23601648 (+)
samd11 samd11 coding upstream 233560 23502322 ~ 23557887 (+)
clstn1 clstn1 coding downstream 35208 23849614 ~ 23890973 (+)
nmnat1 nmnat1 coding downstream 79807 23894213 ~ 23904039 (+)
rbp7a rbp7 coding downstream 89559 23903965 ~ 23905818 (+)
ube4b ube4b coding downstream 92494 23906900 ~ 23927466 (+)
kif1b kif1b coding downstream 114060 23928466 ~ 23993692 (+)
G52604 NA non-coding upstream 925 23789448 ~ 23790522 (+)
G52569 NA non-coding upstream 104086 23686352 ~ 23687361 (+)
G52509 NA non-coding upstream 343890 23447353 ~ 23447557 (+)
LOC120558323 NA non-coding upstream 516252 23265231 ~ 23275195 (+)
G52461 NA non-coding upstream 544943 23221926 ~ 23246504 (+)
G52611 NA non-coding downstream 23286 23837692 ~ 23837962 (+)
G52628 tardbp,LOC106566965 non-coding downstream 195390 24009796 ~ 24011101 (+)
G52629 NA non-coding downstream 198557 24012963 ~ 24013301 (+)
LOC120558580 NA non-coding downstream 246657 24061063 ~ 24074008 (+)
G52728 NA non-coding downstream 455715 24270121 ~ 24274036 (+)
tmem201 tmem201,LOC102777799 other upstream 26282 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 722968 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 944509 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 1228926 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 1231119 22556329 ~ 22560328 (+)
LOC120559118 LOC102791662 other downstream 1126389 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 1139036 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 1929183 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 2257179 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 2538054 26352460 ~ 26353463 (+)

Expression


Co-expression Network