G52629


Basic Information

Item Value
gene id G52629
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24012963 ~ 24013301 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70296
TTCGGCTCACACCACGCGTAAACAAGTtagccagctaacgttagctaacaagcTAGCAAACTCAAGACGGCTTGGAAAATGAATGACCATCCAGTTTCGCGCTCGTTTTCCCGTAACAAACACACGAGCCCACCTTTTGTCTACGAGCGTGTGATCGAAGATTGTACGCAAATAACAACAACGACAATGTATCTTTTTTCTGTAAGATTTAAGTACGAAATCGTAAAACCGAAGAGAATATTTGCAACAGTACACGGCTAACCTCTGTAACCTCGAGCTAGCTAACAAAATGGCTGCGTACTTCTACGTACTTTGTCGAGATGACATCACCCAGTTGGG

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0097367 carbohydrate derivative binding molecular_function
GO:0017076 purine nucleotide binding molecular_function
GO:0035639 purine ribonucleoside triphosphate binding molecular_function
GO:0030554 adenyl nucleotide binding molecular_function
GO:0043168 anion binding molecular_function
GO:0032553 ribonucleotide binding molecular_function
GO:0032555 purine ribonucleotide binding molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU70296 True 339 lncRNA 0.44 1 24012963 24013301

Neighbor

gene id symbol gene type direction distance location
pgd pgd coding upstream 11527 23994946 ~ 24001436 (+)
kif1b kif1b coding upstream 19271 23928466 ~ 23993692 (+)
ube4b ube4b coding upstream 85497 23906900 ~ 23927466 (+)
rbp7a rbp7 coding upstream 107145 23903965 ~ 23905818 (+)
nmnat1 nmnat1 coding upstream 108924 23894213 ~ 23904039 (+)
c5h1orf127 LOC104954118 coding downstream 588 24013889 ~ 24020924 (+)
casz1 casz1 coding downstream 191074 24204375 ~ 24253787 (+)
dffa dffa coding downstream 311960 24325261 ~ 24334067 (+)
LOC120559012 NA coding downstream 429587 24442888 ~ 24497151 (+)
cntn3a.1 NA coding downstream 546106 24559407 ~ 24630995 (+)
G52628 tardbp,LOC106566965 non-coding upstream 1862 24009796 ~ 24011101 (+)
G52611 NA non-coding upstream 175001 23837692 ~ 23837962 (+)
G52604 NA non-coding upstream 222441 23789448 ~ 23790522 (+)
G52569 NA non-coding upstream 325602 23686352 ~ 23687361 (+)
G52509 NA non-coding upstream 565406 23447353 ~ 23447557 (+)
LOC120558580 NA non-coding downstream 47762 24061063 ~ 24074008 (+)
G52728 NA non-coding downstream 256820 24270121 ~ 24274036 (+)
G52742 NA non-coding downstream 347505 24360806 ~ 24362267 (+)
G52756 NA non-coding downstream 373852 24387153 ~ 24390127 (+)
G52817 NA non-coding downstream 692237 24705538 ~ 24705906 (+)
ctnnbip1 ctnnbip1 other upstream 198557 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 247798 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 944484 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 1166025 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 1450442 22562154 ~ 22562521 (+)
LOC120559118 LOC102791662 other downstream 927494 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 940141 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 1730288 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 2058284 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 2339159 26352460 ~ 26353463 (+)

Expression


Co-expression Network