G52742


Basic Information

Item Value
gene id G52742
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24360806 ~ 24362267 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70439
cACCACATACATTTTAATGATATCAAAATTTGAAGCCAGAACAAAATTAAGCAAAGTAGCCCTGCATTACATTGTCATTTTGTGCAATACAGAAGCATATGTCTGAGTAAAACTGGCAGTGGCTGAATGCACACAGATCTCACATAACCATTTTATGTTACCAATTTATTACAGTTCttataaaagtcataaattCATTGCTCAGGTATTTGACACCATTTCTCAACCGATTCTAAGTAGACTTGTAACAGGTACTAACTGAAGATGTTTGACCATGTAATGACTCCGCATACAGGCTCACCACAGTCCAAGCCTACCACAGGTAGTCAATACCCAATACAGAAAGTTAATCACTGCATAATTAATTTACATTTCCCACATTGCAAAGCTCCAGTGCAATTTTACATGTTTgcttaatttgcattttaaaacTGTAACAAATAATTCCATATCAAATTGATAAGTCAAAGCTGAGCAGATTTATTTAATGTTAAattggtgattttttttaaaagggacaCTTTTCTCAACTATTGACACTTAGAGCTTTCTTCTAGGCCACTATATGTGCCCGGTACACTTTAATAGATACAtaacaagtcttttttttttttaaatcaacaacAACCAATTTCAGGCACTATAGGGTTCATGTGTATAGAGGACACATTAGTATTCTGAATATACAGTCATGACATGATGGCAACTGTGTATTTTCCTATGAGCACAAACCGATATTAAATATTACACATAAAAGTACAGCAATACATTACATGTACAACCTCTATGTGGTATGTAATGTATTACATAATGTGTAGATGCATTGAATCCGATAGACAGTACACAGTTTCAGAGTGAGGTCAGATTTGACGGCAATGCTCTTCCCCACTCAGCCCAGCCCATTAAATTGCTCTCCGCAAAACGCTGATAAAACAATTACAgagtaaaaatgacaaaaaaaacaaaaaacaaccatacatcagtaaaataaataaaaacaccaagAGCGTGTAAGACTGGAAGGAAGAAAACATTGGAACAAACACTTTCACTGTATCACTCAGTGCATTCCCACCCACTGATTATTAGGTACCCCCAGCCCTAAAATCTTTAGGAGGCTACTCTCTTCAGTGGTGCTGAACTGCGTTGAGGAGGTGAAGAAGCCGTAGAACAAGGTTGTTGATCTGTGGTCTGAGTGCCAGCTAGAGGTTGAACATAGTGGTATGTTGTTTTTGGTCATGCTTCATTGAGTACCTTTTTGCAAACTCAGGCAGGACGAAGGATGCTTTGTGAATTTCAGGGTTGTAATATCTAAGGTTCATATTTTCCATTTCTTCTTTTGACAGCGCTCTCATTGGTTCCATGAAATTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70439 True 1372 lncRNA 0.37 2 24360806 24362267

Neighbor

gene id symbol gene type direction distance location
dffa dffa coding upstream 26739 24325261 ~ 24334067 (+)
casz1 casz1 coding upstream 107019 24204375 ~ 24253787 (+)
c5h1orf127 LOC104954118 coding upstream 339882 24013889 ~ 24020924 (+)
pgd pgd coding upstream 359370 23994946 ~ 24001436 (+)
kif1b kif1b coding upstream 367114 23928466 ~ 23993692 (+)
LOC120559012 NA coding downstream 80621 24442888 ~ 24497151 (+)
cntn3a.1 NA coding downstream 197140 24559407 ~ 24630995 (+)
ttll9 ttll9 coding downstream 348516 24710783 ~ 24715633 (+)
ppp1r3da ppp1r3d,LOC104919428,LOC100701819 coding downstream 357508 24719775 ~ 24721848 (+)
sycp2 NA coding downstream 360022 24722289 ~ 24750342 (+)
G52728 NA non-coding upstream 86770 24270121 ~ 24274036 (+)
LOC120558580 NA non-coding upstream 286798 24061063 ~ 24074008 (+)
G52629 NA non-coding upstream 347505 24012963 ~ 24013301 (+)
G52628 tardbp,LOC106566965 non-coding upstream 349705 24009796 ~ 24011101 (+)
G52611 NA non-coding upstream 522844 23837692 ~ 23837962 (+)
G52756 NA non-coding downstream 24886 24387153 ~ 24390127 (+)
G52817 NA non-coding downstream 343271 24705538 ~ 24705906 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding downstream 389628 24751895 ~ 24753180 (+)
G52892 NA non-coding downstream 597549 24959816 ~ 24960103 (+)
LOC120558677 NA non-coding downstream 647722 25009989 ~ 25015398 (+)
ctnnbip1 ctnnbip1 other upstream 546400 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 595641 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 1292327 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 1513868 22842044 ~ 22846938 (+)
LOC120559933 NA other upstream 1798285 22562154 ~ 22562521 (+)
LOC120559118 LOC102791662 other downstream 578528 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 591175 24953442 ~ 24957330 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 1381322 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 1709318 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 1990193 26352460 ~ 26353463 (+)

Expression


Co-expression Network