G52871 (LOC104956590)


Basic Information

Item Value
gene id G52871
gene name LOC104956590
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24953442 ~ 24957330 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70648
GTGAAGTATGCCAGGTTGGTCAGAACGTACACCACCGTCACTATCGGCATGGATATGATGATGGACAAGGGCAGGTTTCTCTCTGGATTGATCATCTCCTCAGTCACGTAATTCAGgtaattcCAGCCTCCAAAAGCAAAGAGACCACTGTACAGAGCTAAGACAATATTGTCCACTCCCAGTTTGCTGCCTTCGAACGCCTTGTCTGGTTTCAGGTACGGCAcatcacCTGTGGAAATCTGGATGAAGCCaaagaggatgatgatgatcagGGCTAGCAATTTGGAAGCTGTGAACAAGTCCTGCACCTTGGTGGCCGCTCTCACACTTATGCAGTTTACAAACGTCAGGGAGTAAGACACAAGCAGGCAATGAGCTTGGCTGCACTGTCAGGCACGCTGCAGTTTGGGTAGAGAGGTTTCAGAAGGTAGGTAGCAAACACCAGCGACACCACATACTGTGATGACGGTCTGATAATGAGCATCTCCACCCACAGCTTTAGAAAAGCCGCCAGTTCGCCGTACACCTCCAGGATGTAAGTGTAGTCTCCCCCCGACTTGGTGATGGTTGTGCCCAGCTCAGCATAGCATAGGGCGCCCATGGTAGAGATCACTCCACAGGCAGACCAGATGATTAGGGAGAGCCCAGCTGAGCCGGTCTCTTTGATCACACCTGTTGGAGTGACGAAAATGCCAGAGCCAATGATGGTGCCTATGATCATTCCCACACCATTGAAGAGAGTGATGCTGCGTTTGAGCACGATCTTCTCTTTGGCAGGCGAGCCGATGATAGGGCCTGCGTCAGTAGGAGCAGGGACCATGGGTGTAGACGGAGACGCTGGGTGCTCTACAATCAGATCATCTTGGTCTGGGTCTGCTTCAGCTGttggag

Function

NR:

description
PREDICTED: large neutral amino acids transporter small subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70648 True 891 TUCP 0.52 5 24953442 24957330

Neighbor

gene id symbol gene type direction distance location
LOC120559115 LOC104919424,LOC101480694 coding upstream 33676 24838584 ~ 24919766 (+)
pigt pigt,LOC102793327 coding upstream 160340 24785963 ~ 24793102 (+)
sycp2 NA coding upstream 203100 24722289 ~ 24750342 (+)
ppp1r3da ppp1r3d,LOC104919428,LOC100701819 coding upstream 231594 24719775 ~ 24721848 (+)
ttll9 ttll9 coding upstream 237809 24710783 ~ 24715633 (+)
alas2 alas2,LOC108236847,LOC106524166 coding downstream 33564 24990894 ~ 24999555 (+)
znf362b LOC104920215,LOC103353008 coding downstream 65295 25022625 ~ 25034515 (+)
LOC120558682 LOC103353010 coding downstream 97807 25055137 ~ 25058398 (+)
zmynd12 zmynd12 coding downstream 101130 25058460 ~ 25065176 (+)
LOC120558685 foxj3,LOC100698572,LOC102787620 coding downstream 131575 25088905 ~ 25154501 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 200262 24751895 ~ 24753180 (+)
G52817 NA non-coding upstream 247536 24705538 ~ 24705906 (+)
G52756 NA non-coding upstream 563315 24387153 ~ 24390127 (+)
G52742 NA non-coding upstream 591175 24360806 ~ 24362267 (+)
G52728 NA non-coding upstream 679406 24270121 ~ 24274036 (+)
G52892 NA non-coding downstream 2486 24959816 ~ 24960103 (+)
LOC120558677 NA non-coding downstream 52659 25009989 ~ 25015398 (+)
G53056 NA non-coding downstream 852383 25809713 ~ 25811047 (+)
LOC120559215 NA non-coding downstream 1037903 25995233 ~ 25997094 (+)
G53109 NA non-coding downstream 1139029 26096359 ~ 26099635 (+)
LOC120559118 LOC102791662 other upstream 8122 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 1139036 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 1188277 23746365 ~ 23765165 (+)
atxn7l2b kcnc4 other upstream 1884963 22991252 ~ 23068479 (+)
lamtor5 lamtor5,LOC102787529 other upstream 2106504 22842044 ~ 22846938 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other downstream 786259 25743589 ~ 25748321 (+)
G53096 ybx1 other downstream 1114255 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 1395130 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 1420862 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 1485720 26443050 ~ 26444890 (+)

Expression


Co-expression Network