G53056


Basic Information

Item Value
gene id G53056
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25809713 ~ 25811047 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70912
gttcagtggcgcagatacacaggactcctcttCGGCCAGCACAAacgttttggagcacagcctcgccttgacccagagactcatagataatataatctacctgttcacaatgttgaaaatgtaatgcctggtgttagtaggcctaggtttattagtcacattcttccacttaagtaaacttaaaatgaactatcgctACTTACCTTAGCCTAGGCTACTGCATGCAAAGTAGTGTGACTATCCATATTttaatacatgttaattaatttaaacatttgaattgcattggtttactttgtacatcagcaagcctgcaatacaatgtgatgtaagagccagtcccctgagtttatacaagatgtttccacattaaaacgagtctatttttaatcaactctaatatctgatcgTTTGTCTCTTTCCTTAGagcgtttatatacatattaaagttagttttgtttgtgatttaaaagtgtagctttatcatcatgtgcaggaacaaacaaaacaaagagactaattcatgtgtttataaaaagaatacttattataatcagttcacagatctgagtccaaacagaaactgcacccttctgaactaagaggttctgcttcaaagtgaagtttaaacagactgaaatgtccaggcactcctatttattcattcatttctgcatgtagttatttatttaacgagacttaaaatcatgtccacagtccgagtcccgccagactccctttaggaaacctgtaatttaaacttcagcaggcttcgacagtccgctccgctgagtcctggttctagttctcccgggcttcccttccctccagctgtcccagcagtacggcccgggcctccagcagcgtggtgtcggttttggcttccaggaagcgggcagtgagctccgcaaacggactctgctgccccgctTTAGCTTCTCTCCGGCCGCCGGCCCCCAATAGCAGTGGAACTTCCAGCCGAAATctacatacaggtcgtcctggactacgtggaagatcctgccgatcaccactctgtctttggccggtccgatctggatcagcggggaccggcgcagcagcgagacGAGGCGGTGTTCCTGCCCGGGGAAAGAGACGCTGCGGCCGGGCCACGGAACTCACcacctcccgctgccgccggagctcagattgcaggtccaaggcgccatatatatcataaaacacgttctcacctgtgaacttttatcccttgctgtttgttttttgtcatttctttcgttCCAACATCCATAAACCGTTTGGCATCTTTAGTGCTAATCCTGCGCCACTctactgaactctacctatcgatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70912 True 1335 lncRNA 0.45 1 25809713 25811047

Neighbor

gene id symbol gene type direction distance location
rer1 rer1 coding upstream 3552 25794731 ~ 25806161 (+)
tp73 tp73,LOC102784606 coding upstream 16488 25765160 ~ 25793225 (+)
prdm16 prdm16,LOC102785463 coding upstream 95323 25532101 ~ 25714390 (+)
LOC120558819 NA coding upstream 365873 25440361 ~ 25443840 (+)
tmem51a NA coding upstream 383776 25422882 ~ 25425937 (+)
LOC120559463 NA coding downstream 4309 25815356 ~ 25819330 (+)
LOC120559218 NA coding downstream 12721 25823768 ~ 25829902 (+)
LOC120559220 NA coding downstream 23499 25834546 ~ 25840432 (+)
LOC120559217 LOC103362599 coding downstream 42687 25853734 ~ 25857881 (+)
her3 NA coding downstream 55716 25866763 ~ 25867978 (+)
LOC120558677 NA non-coding upstream 794315 25009989 ~ 25015398 (+)
G52892 NA non-coding upstream 849610 24959816 ~ 24960103 (+)
G52827 LOC107550338,LOC103365918,LOC107551495,LOC104947949 non-coding upstream 1056533 24751895 ~ 24753180 (+)
G52817 NA non-coding upstream 1103807 24705538 ~ 24705906 (+)
G52756 NA non-coding upstream 1419586 24387153 ~ 24390127 (+)
LOC120559215 NA non-coding downstream 184186 25995233 ~ 25997094 (+)
G53109 NA non-coding downstream 285312 26096359 ~ 26099635 (+)
G53221 NA non-coding downstream 514174 26325221 ~ 26325468 (+)
G53222 NA non-coding downstream 514872 26325919 ~ 26329616 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding downstream 519037 26330084 ~ 26330628 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 61392 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 852383 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 864393 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 1995307 23791447 ~ 23814406 (+)
tmem201 tmem201,LOC102777799 other upstream 2044548 23746365 ~ 23765165 (+)
G53096 ybx1 other downstream 260538 26071585 ~ 26076664 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 541413 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 567145 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 632003 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 672485 26483532 ~ 26537351 (+)

Expression


Co-expression Network