G53222


Basic Information

Item Value
gene id G53222
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26325919 ~ 26329616 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71141
ACTACAACACAATGATTCACATACAATACAGCATAGTGATGAGTCTATATATACAGAACTGTGATTCTTCACATAATCATGTTGACGCTACAGTATAGgcatacagaaataaaacaaacatttctttGAACGAAATTAGCGTGTGCATTTCTTTTGCATTTTACTATGTCATGGCACGCTATTTTACTTACAAGATTAACAATATATAGCACATGTAATTTAGATATGTTGAAATAAGACAGTTGGACAGCAGGTGGCAATATAGTACACATCCCCCCCCTCCTTCGGATTCATTTATTATACTTGAAACATGATGTCAAATAGAGGGTTTGCTTGGACACATACAGTAGGGTCTGACCAGAgggatttttttcattttggatgtcATGTGCTGGAATGGAGACACTATGTATAACATGTTATTTCTGTAAATTTATCATCCCATTTATCTGCTAAGCCTCGAAGAATACTCACCGACCTGATTTTTCATCAGCACTCACATGAGGAAGACAGTGGTGATGGCTCATGGTGGCTGTGATTGTGAATGTGAAGCCCTGAGATGTTGTTTATGAGCATAGAGCATGAGACAGAGCGGTGCTGTCATTAATTAGGCTGTTAGGTATTAGACAATTTACATACTCGGGTCCTATTTGGGTTAAATAGAAGTCCAGTCATGCCATGTAATACGCTGAACTTAGAATagagaattttttttcaaagtaaaaaatgttatttaaaagcTGTTTGGTCGTAAAGCACATTTCCTTTAAGAGCGACACACTTCTGTTCTAATCTGTCCTTTAATTCAGTGACTCAGCTCAGTCCAAACACATCCATATGTTCGCCACCCACCAGAGACATGTTGCGTTCTTCTATCCTGATTGGCTGGTCAGGATTTCTGACAGAAGAATAACAGCACGCCTTGACAACAAGCTACAAACAACAAACATCTGTCATACGGTCGGTCCATCCCAGACTGGTGGCTGCTCAGCTGGGGACTCGTTTGCAGACACTCCCTAATCATTGGACTGTTGATGGGTCTGTTTAAAAAGCACTTAATCACTAAAAGAACATCCATATAgtctaaaaaatgttgaagatgttacttcacttctgttttaaaatcaaaatttaGACAATACATAGTCTAACTTTACATTAGGAGACAAAGGATGCAGGCATTATAATTTCAGCCTTGCATCAAGCACCAGAAAGTTTaggaaaatatttgaaaatcaatgtAGTATACCTTGATCTGCCCTTACGTGGTAAACCCAAACTTTCTGGTCCTGCACTAGAACATTTTTGCAAGCACGTTTTCAGCCCAGCCCTGATTTTGTTTTATGATGGAGGAGGAATCTGTGTATGAATGAACTTCAGGAGACTATGACTACTGCTCTGATAAGAGCTTTTAAATCTACTTACAGCTATTGATGTACTTAAGTTGCATCTTTCTCTAGAAACTTTAAGATCAACTCTTATGATGTTAGTATAGTGTAATAAGCGTATAATGAGTAGCTCTAGAGGTAGTAATTACAAATGTATGCACACGTGTTAGTTTGATCATGAGAAGTCAGCTCTTGTTAAGGCTCGATATGAAGACTCACAAGGTGTCGGTGCAATGCAGGGAGGGATCCACAATAAATGGAAGTCGGCAGCATTACCTGAAATATACAATGGCATCATACAGCTGCAACATCACAGTATCAAAGCAATAACAAAAGGTTTCCTCGACACAGACTGGGTTTCCCTGACACATGTTGCTCCACTTATGATGtgttttttgacgtttttcctGTGTTTGAGCCACATTAACACAACAGACCAGTTCTACTTTAAAATAAGAAATCTAAAGCACTGAGTCTCTGATTGGGATTAAgggaacccccccccctctctctttctctctctctctctctgacatctGTCGAAGTCGATCAGACTCTTCTCTCGCAGCATACCAGCTCCTGACTGGAATCAGGACACATGCAAAGATTTGAAAGCTAACCCGCTAAGCGACATGCATGCAGAGTGTGGGTCTTCTGTTACAAGCTGGCGTTACACACTATACTCTTATTTACGACAGAGAAAAAGGTCACGTCTGCCTACAGTATGCCATTCACATGTTGCCCATAAGAAGATGTGTGCAGGGGACGGTGGAGGCTGGAACAGTTGCTGGTCAAAAACCTCTACTGGAGTATACAGCACTATTATTTACAACATGTGTGTACTAAGTCATCAGGGATGGAGTTAGTCCCGTCTCAGCTCAACCACCTCAGGAGGTAATCAGCATCAGTGATGCTTGATCTGGTGACAAATTGATTGGCAGAGAGATCAATGAGTTGATTAAGTGAAgttctgtatttaaaaaaaaacaaattctgatTTAATTTACTTCCTCTACTGACTGAACTGGAAGGGACTGGACCCCAAACCTAAGGGTCATAGTGGTCACCAAAGGAGCTGGAGGGGCTTCATCTAGTTTGAAGACTACAGGGCTACagatcttcatcatcatcttcatcagtgATGCAGTGGAGGGACGGGGGAGACAGGCTGCATGCAGATGGAAGGGGAGGGTCCGTGGACGGGTACAGTGTTTGGTCATCTTCATGGCATTAACTTGCGGCGGTCTCCTGCTGAATGATGTAGTGCCTGTTTGAATCATCCACCTCGCTGCCACAGTGAACATCACTTCTGTTGTCATTGATGTCTCTCGTTTCACTGATACTGTTACCTGCGTTGTCAATGTTGAGTGGGAAGGACTCCAGTATGTCTCCAGTATATCTGCCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71141 True 2795 lncRNA 0.41 4 26325919 26329616

Neighbor

gene id symbol gene type direction distance location
LOC120559018 NA coding upstream 51131 26266807 ~ 26274788 (+)
LOC120559565 NA coding upstream 65965 26247997 ~ 26259954 (+)
rprd1b rprd1b coding upstream 78637 26236839 ~ 26247282 (+)
her12 LOC101486328 coding upstream 102076 26222495 ~ 26223843 (+)
LOC120558413 LOC103372574 coding upstream 107837 26216514 ~ 26218082 (+)
LOC120559111 LOC104966951,LOC104926426,LOC101067761,LOC103384493 coding downstream 36474 26366090 ~ 26374329 (+)
LOC120559112 shmt2,LOC103362774,LOC102296343,LOC102798994 coding downstream 53975 26383591 ~ 26393733 (+)
LOC120559752 slc32a1,LOC103362770,LOC104926430,LOC101482923,LOC102798107,LOC102295106 coding downstream 94497 26424113 ~ 26427752 (+)
bpifcl NA coding downstream 98862 26428478 ~ 26435464 (+)
LOC120559781 chmp4b,LOC103362760,LOC106511320 coding downstream 210284 26539900 ~ 26546310 (+)
G53221 NA non-coding upstream 451 26325221 ~ 26325468 (+)
G53109 NA non-coding upstream 226284 26096359 ~ 26099635 (+)
LOC120559215 NA non-coding upstream 328825 25995233 ~ 25997094 (+)
G53056 NA non-coding upstream 514872 25809713 ~ 25811047 (+)
LOC120558677 NA non-coding upstream 1310521 25009989 ~ 25015398 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding downstream 468 26330084 ~ 26330628 (+)
G53239 NA non-coding downstream 34826 26364442 ~ 26364837 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding downstream 67583 26397199 ~ 26402428 (+)
LOC120559830 NA non-coding downstream 85269 26414885 ~ 26423059 (+)
G53285 NA non-coding downstream 297680 26627296 ~ 26631607 (+)
G53096 ybx1 other upstream 249255 26071585 ~ 26076664 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 577598 25743589 ~ 25748321 (+)
G52871 LOC104956590 other upstream 1368589 24953442 ~ 24957330 (+)
LOC120559118 LOC102791662 other upstream 1380599 24940795 ~ 24945320 (+)
ctnnbip1 ctnnbip1 other upstream 2511513 23791447 ~ 23814406 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other downstream 22844 26352460 ~ 26353463 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other downstream 48576 26378192 ~ 26383047 (+)
atp5f1e NA other downstream 113434 26443050 ~ 26444890 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other downstream 153916 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other downstream 160826 26490442 ~ 26523888 (+)

Expression


Co-expression Network