LOC120559571 (vapb,LOC100711919,LOC102796136,LOC101481364)


Basic Information

Item Value
gene id LOC120559571
gene name vapb,LOC100711919,LOC102796136,LOC101481364
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26483532 ~ 26537351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71206
tgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgttagacgatgAAATCACAGGCTGTTTAAGAGCGGAGGAAGAGGGGtgatttgaaaacaaaatgtaatctAAACAGATTTCCTGTacacaacagaaaaatgggGGGTCTTTGTTGGAAATCAGTTTAAAACTTGATCATGTTTGTCGCTTACTGGCCCAAGGAATCAGTAGAAATCcaataaatcaatttttttggccatttgtGAAATTATAACCTGGTACGCATCAAGATATGGATAAGAATTTATGCTGCACGATGAtgtagttaaaaaaacaaagctgtAATATTTAGTAAAAGACATCAGATTTTTCTAGTTCACATTTTTACTTGTCTTGATACTTCATCAGTTTGAGAGAGGCAGCCCCCTGGACATTTTCAATatataacatacagtatgtaacaaTAGCTTTGGCCACCTTGTTTAATTTTGCCCATGGAGTATTGTATTTGCGTCCTCTAGTGTATTACAGCAGCtgtttgcctttttttcttATCATGTAGCCACAATGCTTCTGTTGTTTATAATATTCAAATGCACTATATTCAAGTGTCCACTCTGCATGAAATGACCTGgatttattatgattattattctcttttcttttttgagtGTTGAAGTTTATtggcaaaacaaaaaagacataCCGTCTTCTTAAAAGGGACCAtcgtgggtgtgtgcgtgtgagagagagagagagagagagagagagagagtgagtgtgtgagtgagtgtgtgtgagagagagattatctttttcttttgtttcctgtTGGGCTCTGGTGGTCGTGCGGTAACTGAGACAACACAGCTGTATTATCTCGGCTGTCTCATGACCATCTAAGCAGGTtgttcaagaaaaaaaaaaagaataaatatctGTATTTTTCGTTGCCTGAGGGAGCTCTGGGAGCAGAGAAGTGGGAATGTGGATGTCTGGGAGGAGGACTGACCTGTGAATACACACTacattaaagaagaaaaaaaaaacgacattagCGCTTCAGACCACACATGCAAAGATACAGTCACACAGCAATGTAATCACACAGTAATTGGATACTCTTTTGTATGTACATAAAAATATAACTGGCAAAGTTATTAACATACTGTAGTaaaggaagaaaataaacaacCAACATGGATCATGTAGCATCATAatgaattaaaatatataaattcccccc
>XM_039801394.1
ctccttccttcccgtctctctctccctccgctGCTAACCAACAGTTAGCACTAGCACGTTAGCCTCCAGCAGCTGTCGGTGGCAGTCAGTCCGAGTGGTGGTGCATTTGtaatcatcctcctcctcctcctctcccgtAGATAGACCGTGGACGGCCAGGTTGTTTCTTCGGGAGCCAGCTGCTTCACCTCCTCGGGCTACCTGCAGTAAAATTGTGTTGTCCTCGTCGTCACGACAGGAAGAAGCCCTGGGACATGGCCAGACCAGAACAAGTACTGGTGCTAGAGCCACAACACGAACTGAAATTCAGAGGCCCGTTTACAGATGTCGTCACTGCCACTCTGAAGCTCACCAACCCCACAGATAGAAATGTGTGTTTCAAAGTCAAGACAACCGCGCCTCGCAGATACTGTGTGCGCCCAAACAGTGGCGTTATTGATGCTGGAAACTCCGTCAATGTTTCTGTTATGCTACAGCCGTTTGACTACGACCCCAATGAAAAGAGTAAACACAAATTCATGGTGCAGTCCATGCTGGCTCCATACGACATGACTGACATGGAAGGAGTTTGGAAGGAGGCAAAGCCTGACGAGCTGATGGATTCAAAGTTGAGATGTGCATTTGAGATGCCTGTAGAAAATGACAAAACTcaTGAGAGTGAAACCAACAAAACTGTgtcttcctctgcctcctctgtTAAGACTGAGCTCTCCACGCTGCCCAAGTCAGCCAGTGCCTCGCTGGATGACGGCGAGGTGAAGAAGATCATGGAGGAGTGCAAGCGGCTGCAGATGGAGGTGCAGAGGCTAcgggaagaaaacaaacagatcAGGGAGGACGACGGGCTAAGGAAGAGAAAGGTGACCTCAATGGGCGCGCCttactcttcttcctcctccgcCATGGCCACCTCTGCCATGAGGGACGAAGGCCTAAGCACCCGCATCCTGGCGCTCTGCGTGCTCTTCTTTGTCATTGGAGTCATCATTGGCAAGCTGGCCCTgtagagacacagacagtgaCAGACGGGCGGATGGCGTGCTCGGGAGGACATGTGTCAATGACGGCAACGAGGATGTCTTCTGGGTTTATGTtgatttctctttctttttaacatttaagGCAATATCACAATGGTTTGTCTGGATGGAAAATGATTTAACGTGTAAAAAGAGAACGAAGGAAGGCGATCCCTAGTGAAACCATGTGCGAGCGTTTTTGTCACAGGTCTTgccttttttttgtgaaataatcaCCACCTCTGATCTGTTCTTCTCTGTCCATCCCTCCTTCCTAAATGATCTTCCGCATCTTGCACAGGTAACAGTTAGTTGTGTGTGGAAGTGGCTTCATGCTGGCTGAATGTCAAAAGTCTTTCATTGATTCTTCTTTTGATTCTTAAGTCTTCAAGTTCCTCACTCACATTGTCTATAAAAAAGATCTAACACTCCTCTTCTGATAATCTCTCTTCCACTTATTACTGCTAATCTGCAAAGAGAGGTGAACAGTAATCagtgaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacgatgAAATCACAGGCTGTTTAAGAGCGGAGGAAGAGGGGtgatttgaaaacaaaatgtaatctAAACAGATTTCCTGTacacaacagaaaaatgggGGGTCTTTGTTGGAAATCAGTTTAAAACTTGATCATGTTTGTCGCTTACTGGCCCAAGGAATCAGTAGAAATCcaataaatcaatttttttggccatttgtGAAATTATAACCTGGTACGCATCAAGATATGGATAAGAATTTATGCTGCACGATGAtgtagttaaaaaaacaaagctgtAATATTTAGTAAAAGACATCAGATTTTTCTAGTTCACATTTTTACTTGTCTTGATACTTCATCAGTTTGAGAGAGGCAGCCCCCTGGACATTTTCAATatataacatacagtatgtaacaaTAGCTTTGGCCACCTTGTTTAATTTTGCCCATGGAGTATTGTATTTGCGTCCTCTAGTGTATTACAGCAGCtgtttgcctttttttcttATCATGTAGCCACAATGCTTCTGTTGTTTATAATATTCAAATGCACTATATTCAAGTGTCCACTCTGCATGAAATGACCTGgatttattatgattattattctcttttcttttttgagtGTTGAAGTTTATtggcaaaacaaaaaagacataCCGTCTTCTTAAAAGGGACCAtcgtgggtgtgtgcgtgtgagagagagagagagagagagagagagagagtgagtgtgtgagtgagtgtgtgtgagagagagattatctttttcttttgtttcctgtTGGGCTCTGGTGGTCGTGCGGTAACTGAGACAACACAGCTGTATTATCTCGGCTGTCTCATGACCATCTAAGCAGGTtgttcaagaaaaaaaaaaagaataaatatctGTATTTTTCGTTGCCTGAGGGAGCTCTGGGAGCAGAGAAGTGGGAATGTGGATGTCTGGGAGGAGGACTGACCTGTGAATACACACTacattaaagaagaaaaaaaaaacgacattagCGCTTCAGACCACACATGCAAAGATACAGTCACACAGCAATGTAATCACACAGTAATTGGATACTCTTTTGTATGTACATAAAAATATAACTGGCAAAGTTATTAACATACTGTAGTaaaggaagaaaataaacaacCAACATGGATCATGTAGCATCATAatgaattaaaatatataaattccccccccccatccccaaCTGTCTGCTTCTGTGAAAAGCTTGCACTTTTTTGGTATTTAATTCTAAATTTAAAACGAGATTGTAAGGTGTGTGCCAAAAAGAAATTTCAGATAGTAAGTAACGGAGCAAATATCTGGGGTGCAGAAACACTAAGCTGTTGCTCTAAATTAGTGGTTATCCAgtgctgaaataaaatgtaactgCTCTTTGTATTAAA
>XM_039801395.1
cctccttccttcccgtctctctctccctccgctGCTAACCAACAGTTAGCACTAGCACGTTAGCCTCCAGCAGCTGTCGGTGGCAGTCAGTCCGAGTGGTGGTGCATTTGtaatcatcctcctcctcctcctctcccgtAGATAGACCGTGGACGGCCAGGTTGTTTCTTCGGGAGCCAGCTGCTTCACCTCCTCGGGCTACCTGCAGTAAAATTGTGTTGTCCTCGTCGTCACGACAGGAAGAAGCCCTGGGACATGGCCAGACCAGAACAAGTACTGGTGCTAGAGCCACAACACGAACTGAAATTCAGAGGCCCGTTTACAGATGTCGTCACTGCCACTCTGAAGCTCACCAACCCCACAGATAGAAATGTGTGTTTCAAAGTCAAGACAACCGCGCCTCGCAGATACTGTGTGCGCCCAAACAGTGGCGTTATTGATGCTGGAAACTCCGTCAATGTTTCTGTTATGCTACAGCCGTTTGACTACGACCCCAATGAAAAGAGTAAACACAAATTCATGGTGCAGTCCATGCTGGCTCCATACGACATGACTGACATGGAAGGAGTTTGGAAGGAGGCAAAGCCTGACGAGCTGATGGATTCAAAGTTGAGATGTGCATTTGAGATGCCTGTAGAAAATGACAAAACTACTGAGCTCTCCACGCTGCCCAAGTCAGCCAGTGCCTCGCTGGATGACGGCGAGGTGAAGAAGATCATGGAGGAGTGCAAGCGGCTGCAGATGGAGGTGCAGAGGCTAcgggaagaaaacaaacagatcAGGGAGGACGACGGGCTAAGGAAGAGAAAGGTGACCTCAATGGGCGCGCCttactcttcttcctcctccgcCATGGCCACCTCTGCCATGAGGGACGAAGGCCTAAGCACCCGCATCCTGGCGCTCTGCGTGCTCTTCTTTGTCATTGGAGTCATCATTGGCAAGCTGGCCCTgtagagacacagacagtgaCAGACGGGCGGATGGCGTGCTCGGGAGGACATGTGTCAATGACGGCAACGAGGATGTCTTCTGGGTTTATGTtgatttctctttctttttaacatttaagGCAATATCACAATGGTTTGTCTGGATGGAAAATGATTTAACGTGTAAAAAGAGAACGAAGGAAGGCGATCCCTAGTGAAACCATGTGCGAGCGTTTTTGTCACAGGTCTTgccttttttttgtgaaataatcaCCACCTCTGATCTGTTCTTCTCTGTCCATCCCTCCTTCCTAAATGATCTTCCGCATCTTGCACAGGTAACAGTTAGTTGTGTGTGGAAGTGGCTTCATGCTGGCTGAATGTCAAAAGTCTTTCATTGATTCTTCTTTTGATTCTTAAGTCTTCAAGTTCCTCACTCACATTGTCTATAAAAAAGATCTAACACTCCTCTTCTGATAATCTCTCTTCCACTTATTACTGCTAATCTGCAAAGAGAGGTGAACAGTAATCagtgaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacgatgAAATCACAGGCTGTTTAAGAGCGGAGGAAGAGGGGtgatttgaaaacaaaatgtaatctAAACAGATTTCCTGTacacaacagaaaaatgggGGGTCTTTGTTGGAAATCAGTTTAAAACTTGATCATGTTTGTCGCTTACTGGCCCAAGGAATCAGTAGAAATCcaataaatcaatttttttggccatttgtGAAATTATAACCTGGTACGCATCAAGATATGGATAAGAATTTATGCTGCACGATGAtgtagttaaaaaaacaaagctgtAATATTTAGTAAAAGACATCAGATTTTTCTAGTTCACATTTTTACTTGTCTTGATACTTCATCAGTTTGAGAGAGGCAGCCCCCTGGACATTTTCAATatataacatacagtatgtaacaaTAGCTTTGGCCACCTTGTTTAATTTTGCCCATGGAGTATTGTATTTGCGTCCTCTAGTGTATTACAGCAGCtgtttgcctttttttcttATCATGTAGCCACAATGCTTCTGTTGTTTATAATATTCAAATGCACTATATTCAAGTGTCCACTCTGCATGAAATGACCTGgatttattatgattattattctcttttcttttttgagtGTTGAAGTTTATtggcaaaacaaaaaagacataCCGTCTTCTTAAAAGGGACCAtcgtgggtgtgtgcgtgtgagagagagagagagagagagagagagagagtgagtgtgtgagtgagtgtgtgtgagagagagattatctttttcttttgtttcctgtTGGGCTCTGGTGGTCGTGCGGTAACTGAGACAACACAGCTGTATTATCTCGGCTGTCTCATGACCATCTAAGCAGGTtgttcaagaaaaaaaaaaagaataaatatctGTATTTTTCGTTGCCTGAGGGAGCTCTGGGAGCAGAGAAGTGGGAATGTGGATGTCTGGGAGGAGGACTGACCTGTGAATACACACTacattaaagaagaaaaaaaaaacgacattagCGCTTCAGACCACACATGCAAAGATACAGTCACACAGCAATGTAATCACACAGTAATTGGATACTCTTTTGTATGTACATAAAAATATAACTGGCAAAGTTATTAACATACTGTAGTaaaggaagaaaataaacaacCAACATGGATCATGTAGCATCATAatgaattaaaatatataaattccccccccccatccccaaCTGTCTGCTTCTGTGAAAAGCTTGCACTTTTTTGGTATTTAATTCTAAATTTAAAACGAGATTGTAAGGTGTGTGCCAAAAAGAAATTTCAGATAGTAAGTAACGGAGCAAATATCTGGGGTGCAGAAACACTAAGCTGTTGCTCTAAATTAGTGGTTATCCAgtgctgaaataaaatgtaactgCTCTTTGTATTAAA

Function

symbol description
vapb Predicted to enable FFAT motif binding activity. Acts upstream of or within regulation of heart contraction and swimming behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Is expressed in atrium; cardiac ventricle; and heart. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis; amyotrophic lateral sclerosis type 8; autosomal dominant adult-onset proximal spinal muscular atrophy; and spinal muscular atrophy. Orthologous to human VAPB (VAMP associated protein B and C).

NR:

description
PREDICTED: vesicle-associated membrane protein-associated protein B/C isoform X1

GO: NA

KEGG:

id description
K10707 VAPB, ALS8; vesicle-associated membrane protein-associated protein B

RNA

RNA id representative length rna type GC content exon number start site end site
TU71206 False 1233 lncRNA 0.37 3 26483532 26537140
XM_039801394.1 True 3118 mRNA 0.44 6 26528531 26537351
XM_039801395.1 False 3068 mRNA 0.44 6 26528530 26537351

Neighbor

gene id symbol gene type direction distance location
bpifcl NA coding upstream 48068 26428478 ~ 26435464 (+)
LOC120559752 slc32a1,LOC103362770,LOC104926430,LOC101482923,LOC102798107,LOC102295106 coding upstream 55780 26424113 ~ 26427752 (+)
LOC120559112 shmt2,LOC103362774,LOC102296343,LOC102798994 coding upstream 89799 26383591 ~ 26393733 (+)
LOC120559111 LOC104966951,LOC104926426,LOC101067761,LOC103384493 coding upstream 109203 26366090 ~ 26374329 (+)
LOC120559018 NA coding upstream 208744 26266807 ~ 26274788 (+)
LOC120559781 chmp4b,LOC103362760,LOC106511320 coding downstream 2549 26539900 ~ 26546310 (+)
eif2s2 eif2s2 coding downstream 9805 26547156 ~ 26553116 (+)
LOC120559568 srsf6,LOC103156038,LOC103362762,LOC103468026,LOC106952897 coding downstream 16508 26553859 ~ 26558935 (+)
l3mbtl1 LOC100690549,LOC102290764,LOC101478974 coding downstream 21910 26559261 ~ 26577079 (+)
sgk2a sgk2 coding downstream 43327 26580678 ~ 26594851 (+)
LOC120559830 NA non-coding upstream 60473 26414885 ~ 26423059 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding upstream 81104 26397199 ~ 26402428 (+)
G53239 NA non-coding upstream 118695 26364442 ~ 26364837 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding upstream 152904 26330084 ~ 26330628 (+)
G53222 NA non-coding upstream 153916 26325919 ~ 26329616 (+)
G53285 NA non-coding downstream 89945 26627296 ~ 26631607 (+)
G53418 NA non-coding downstream 283310 26820661 ~ 26823621 (+)
G53445 NA non-coding downstream 452478 26989829 ~ 26993682 (+)
G53455 LOC108233118,LOC101063193,LOC101159349,LOC103384990,LOC104941321,LOC103359395 non-coding downstream 600780 27138131 ~ 27207789 (+)
G53461 NA non-coding downstream 620119 27157470 ~ 27159414 (+)
atp5f1e NA other upstream 38642 26443050 ~ 26444890 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other upstream 100485 26378192 ~ 26383047 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other upstream 130069 26352460 ~ 26353463 (+)
G53096 ybx1 other upstream 406868 26071585 ~ 26076664 (+)
tprg1l tprg1l,LOC102784883,LOC106513028 other upstream 735211 25743589 ~ 25748321 (+)
G53305 NA other downstream 262745 26800096 ~ 26800746 (+)
si:dkey-20d21.12 LOC101471973,LOC106098224,LOC107390607 other downstream 647143 27184494 ~ 27187943 (+)
G53488 NA other downstream 718023 27255374 ~ 27255716 (+)
LOC120559859 LOC101468803,LOC100690459 other downstream 874901 27412252 ~ 27417459 (+)
LOC120559343 NA other downstream 1048174 27585525 ~ 27595409 (+)

Expression


Co-expression Network