G53285


Basic Information

Item Value
gene id G53285
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26627296 ~ 26631607 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71235
TTGTGAAGAAACCATCCCTTTATTGATGTGAAGCAGTCCCAGCCAAGTCAGGGTCAAAAGGGTTAAAAACAGTCAGTGCTCAAACAGACCAAACCGTTTCTCCACACCCTGCTGGATCTAGTGGGGTGGGATTTACAGAGTCGTACTGGGTGCAGACGTACGAAACACCGCGCGCTGAAGAAGTGAGAGGGGTTCCacagaaaatataaaaagactTCACTTTACTCCAAACCACGTTCACTGCTTTTACTGAAACACTACAGCAGTACCAGAACTTTCTCTGGGAGGTAGGAAGGGCTTAGAGGGTTGaggtgtggatgtgtgtgtgaagggaaGGGAAGTGTTTACACAAACTAATGGGGTAAAAATCTGGGGGGTCAAAACCACATCGACGACGTTAGAGAAAAACCatgttatcttttttttttttttttttcccaaacaaATGCTTTTTGTTTAATGAGAAGGAGAGCATGAGTGGGCTAGAAGGGCTTCCCCTCCTTCTGTGttggtttatttgtttgttgtctCCATGGTGATCGCCAGTGAACCACGGAGTCCTTTACCATATTGTTGCCGCTGGCTGCCACCGCTGCAGCGTTCTTACTTGGCGTTGGCGGAGCTGCTGAGCACCTTGCGGACTGCCTGAGTGATGGCGTCGCGGTCGATGCCAAAGATACGGAGCAGCTCTTGGGGCTTGCCGCTGCGTGGCACCTGGGAAACCGCCAGGCGGTGGACGGTGAAGCCGGTCTCGTTTATTACTGCCGAGCACACTGCCTCACCTAGACCACCTTCATAGTAGTGGTCCTCCACTGTGATGATGCGTCCTCTGGTGGCCCTGGCGTTGTCGATGATGGTCTTGGAGTCCAGGGGTTTGATGGTGAACGGGTCAATCACGCGGATGTTAATTCTTtctttcTTCAGCTGTTCAGCAGCAGCCAGAGCCTCGTGGAGGGTCACTCCTGCTCCAATCACAGTCACATGGTCGTCATTGGTTTTAAACACAACCTTAGCCTGACCAACATGGAAGTCCTCATTGCAGTTGTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71235 True 1050 lncRNA 0.50 4 26627296 26631607

Neighbor

gene id symbol gene type direction distance location
LOC120559326 LOC103362754,LOC107086658,LOC103156032,LOC105936371,LOC106952892,LOC100689745 coding upstream 6177 26614381 ~ 26621119 (+)
nsun5 nsun5 coding upstream 13035 26608148 ~ 26614261 (+)
mybl2a NA coding upstream 19548 26598495 ~ 26607748 (+)
sgk2a sgk2 coding upstream 32445 26580678 ~ 26594851 (+)
l3mbtl1 LOC100690549,LOC102290764,LOC101478974 coding upstream 50217 26559261 ~ 26577079 (+)
cacna1db cacna1d coding downstream 27564 26659171 ~ 26755291 (+)
LOC120559767 NA coding downstream 144203 26775810 ~ 26783032 (+)
actr8 actr8 coding downstream 154183 26785790 ~ 26792394 (+)
LOC120559520 NA coding downstream 180614 26812221 ~ 26851708 (+)
sema3bl sema3g coding downstream 269868 26901475 ~ 26962893 (+)
LOC120559830 NA non-coding upstream 204237 26414885 ~ 26423059 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding upstream 224868 26397199 ~ 26402428 (+)
G53239 NA non-coding upstream 262459 26364442 ~ 26364837 (+)
G53223 LOC103362778,LOC108236819,LOC101165391 non-coding upstream 296668 26330084 ~ 26330628 (+)
G53222 NA non-coding upstream 297680 26325919 ~ 26329616 (+)
G53418 NA non-coding downstream 189054 26820661 ~ 26823621 (+)
G53445 NA non-coding downstream 358222 26989829 ~ 26993682 (+)
G53455 LOC108233118,LOC101063193,LOC101159349,LOC103384990,LOC104941321,LOC103359395 non-coding downstream 506524 27138131 ~ 27207789 (+)
G53461 NA non-coding downstream 525863 27157470 ~ 27159414 (+)
G53487 NA non-coding downstream 621996 27253603 ~ 27255190 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other upstream 89945 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other upstream 103408 26490442 ~ 26523888 (+)
atp5f1e NA other upstream 182406 26443050 ~ 26444890 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other upstream 244249 26378192 ~ 26383047 (+)
G53232 LOC104966952,LOC103362776,LOC102800046,LOC102208894 other upstream 273833 26352460 ~ 26353463 (+)
G53305 NA other downstream 168489 26800096 ~ 26800746 (+)
si:dkey-20d21.12 LOC101471973,LOC106098224,LOC107390607 other downstream 552887 27184494 ~ 27187943 (+)
G53488 NA other downstream 623767 27255374 ~ 27255716 (+)
LOC120559859 LOC101468803,LOC100690459 other downstream 780645 27412252 ~ 27417459 (+)
LOC120559343 NA other downstream 953918 27585525 ~ 27595409 (+)

Expression


Co-expression Network