G53455 (LOC108233118,LOC101063193,LOC101159349,LOC103384990,LOC104941321,LOC103359395)


Basic Information

Item Value
gene id G53455
gene name LOC108233118,LOC101063193,LOC101159349,LOC103384990,LOC104941321,LOC103359395
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27138131 ~ 27207789 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71466
ttaggggtgtgtgtgtgtgtgtgtgtgtgtgtattttatgtgtACACTGCGTTACCTGTATTAAGGTCATCGCAGCAAAGACATTCATACTGAGAGGTTGGAGCTTCCTCAAGCAACGAGCTGTGAGGCCTTTAGCTTGCTCTGTGTGCGCGTCTGAGGTCATCGAGGAGTGTGTTGAACTAGCATGTGCACGAGGAGGAGCAGACTAAGTGAGGTGGGCGTCTCTCAGTGCCTACATAGGTGTCAAAGTATGCGAGTGTGTTCATACTGTGTGGCCATTTATGTACTCGCAGGTGAGCTAAGTACAATTTCTTATGAGTTTGTACGTTCTGTGTAGAGCTTATTATGAGTCTGTATAGCCACTGCGTTGTGTGAGAGAGGacgtacatgtgtgtgtgtgtgtgtgtgtgcgagtatgtgtgtctgtgtgtgttagaagGCACGGAGTGTGGTGTGGGAGGCTCAGTCTCTCAGGTCCATGCTGGAGCCGAACAGTGCCACCAGCTGCTCCTCATAGTGGGCGATGTTCCTTTTCATAATCTCCTTACAGGAACCCAGGAGACGCTCAAACGCCTGCACGTCTATTActgca
>TU71468
TTTTCATATCAGTGTCCAATTCAGTAGTAAAATGACAGCGGGTCATggggaaatgaaaatgaaattgtCTTTAATAAAAATAAGATATTTTCTAATTAAATAAACAATGTTATTCAAAATGTTTACATACAAATTCAGTGAAATATTAAAATCCACAGTGATGCTAAAAGTGCACCTTCAAGACAGTGATAACCGACAACCTAtgaattattagtattatttctATATTAAGTATGTTATTATTTTCACCAGATAATACATTCAGAGCTCCACAGAAAGTCCAAAGACAATGAAATCACATTTCATTAGTTGCCAGACAGAACAAACATAATGACAATTAACATATTTTCAAGTTAGATGATCATTGTACCACATGTAGTGTAAATTTGTCTTTCAGCCTCATCATAGTGCCATATGATAAACAGTCTGGTCAGGTTTTATTTGATGTGGAGGTCAGGGTTTTGACCATATCAACAGAGCAAACTGGAACTCCCTCAAAATCCCTCTAAACAAAAACTCAGTGGAAAATCTGCTAATTAACACATAAATGGCAATTCCACCAACTTCACTGGCACATTTGTGTTAATTAGCATATTTCagacagattattattattattattattattattattattattattattattatatagttGGCCCTGTTTAACCTCCATTGATCGAGCGGTTTATGACCAACAATAATATGATTAGAAATGTGGTTCTGTGGTATTTGAAAGaccttgaaaaaaaatgcagacaTTTAGTGTTTTAACATCAAACGAACCATTTGGCATCTTTGTTTTGGTCCAGCAGTGACAGAGTAAATTACGTCAGCAAATTAGCAAAACTTACTacaaaaatataacaaataGTTAATTTAATCCTTGTGTTTAATATAGCCACACAGCCTCACGGTTTCTGTTCTTACCCAAAGTGCAGTAAGTAGATTCCATTTAACCTGCTGTCCacttagaaaaagaaaagacagaactTGGTCTACGAACCATGTTACCATAGCATCAAGGCCCATATTGTCATACATAAAGTCTTGGACTCAACAATACTGCTTGTAATTTACTTCCagtacacatactgtattgtaTAATAGTTACCATTTTGGTGATACTTTTCTCTCAGAGGATTCACCAATGAAGAATTGCATTGTTGGAGGTAAACAGAAGGGGGCAGTATTGGTGAATATGGGACCATGGTGTCCTGGAATGATCCAGTGTGAGtgtactgtgtatgtatgtatgtatgtatgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgagtatgtgtgtctgtgtgtgttagaagGCACGGAGTGTGGTGTGGGAGGCTCAGTCTCTCAGGTCCATGCTGGAGCCGAACAGTGCCACCAGCTGCTCCTCATAGTGGGCGATGTTCCTTTTCATAATCTCCTTACAGGAACCCAGGAGACGCTCAAACGCCTGCACGTCTATTACCACACACTTGACATCCCCCACTGCGTAGGCTGAGGCGGCCCGGGGCTTGTTAGTGACCAAGGCCAGCTCCCCGAAGTAGTGACCCCTGCTACAGCGCGTTATCTCCACCTCCGCATTGTCTGCATGGCCTGCCTTCGTTTTACTCTTGATCATGATCTTGACCTCCCCAGATTCAACTATAAAGAAGCATTCAGCCTTCTCTCCCTGTGTGATGATGCGCTCACCATCTGGGAACTGCTTCGATCCTAATACATCCACTATCTTCATCCTCTCGTTCGCCTCCAGTGATTTGAGTAAGGGCACAGACTCGATGAAACTCTCGTACATCCTCCTCTTCTTGTAATTGTTCTTCACAATGAGTCTACGAAATGTGGCACGGTCCAGTCCCCATAGTGCCCCCTCCTGGGTGGCAACAATGGTGGCGGCTCGTGGTGTGTTGTACATGAGTGCCAGCTCGCCGAAGCTGCCCTTATTGTCATACTGACCCACCGTTACTCCCATTACAATTATGTCATACACacccctgagagagagagagaagagagggagttagggaaagagacaaaaaaaaaatatatatataaacagcaaacggggaaaaaaacagaacaccgaaaaaataaattaaaatgactgaTGTGTTTAATTGAGCCAATAGAGTGGACCAGTGTTTTGTTTATTGACCTACTGACTGGTTTAAATAGACATCTAATTACAGCTTATCTGTAGCTTCCGGGCAGGAGCCTGTGTCAGTTTGGCAGACTTGGTGGGCAAATCATTGACTGCGTTTGTGTgggtgtattagtgtgtgtaattgtgtgcatatttctaTTAAAGTAGAAGCTTTTCATACAAGCGCTTCACTGTGACAATATGAAAAGGTGAGAGCAATTCAGTGTAGCTATGATCATTGTTGTATATGTGCATGAACAGAATCAAAACATGTTTGTCAtggttgtatgtgtttgtgataGACCGTAATATTTCTGCAGAGCAGCACCGTCTTccccccttccctctctctcttgcttGCTGTATAAGGATTAAACCTGGGCAAGGTAATTTG
>TU71469
ttaggggtgtgtgtgtgtgtgtgtgtgtgtgtattttatgtgtACACTGCGTTACCTGTATTAAGGTCATCGCAGCAAAGACATTCATACTGAGAGGTTGGAGCTTCCTCAAGCAACGAGCTGTGAGGCCTTTAGCTTGCTCTGTGTGCGCGTCTGAGGTCATCGAGGAGTGTGTTGAACTAGCATGTGCACGAGGAGGAGCAGACTAAGTGAGGTGGGCGTCTCTCAGTGCCTACATAGGTGTCAAAGTATGCGAGTGTGTTCATACTGTGTGGCCATTTATGTACTCGCAGGTGAGCTAAGTACAATTTCTTATGAGTTTGTACGTTCTGTGTAGAGCTTATTATGAGTCTGTATAGCCACTGCGTTGTGTGAGAGAGGacgtacatgtgtgtgtgtgtgtgtgtgtgcgagtatgtgtgtctgtgtgtgttagaagGCACGGAGTGTGGTGTGGGAGGCTCAGTCTCTCAGGTCCATGCTGGAGCCGAACAGTGCCACCAGCTGCTCCTCATAGTGGGCGATGTTCCTTTTCATAATCTCCTTACAGGAACCCAGGAGACGCTCAAACGCCTGCACGTCTATTACCACACACTTGACATCCCCCACTGCGTAGGCTGAGGCGGCCCGGGGCTTGTTAGTGACCAAGGCCAGCTCCCCGAAGTAGTGACCCCTGCTACAGCGCGTTATCTCCACCTCCGCATTGTCTGCATGGCCTGCCTTCGTTTTACTCTTGATCATGATCTTGACCTCCCCAGATTCAACTATAAAGAAGCATTCAGCCTTCTCTCCCTGTGTGATGATGCGCTCACCATCTGGGAACTGCTTCGATCCTAATACATCCACTATCTTCATCCTCTCGTTCGCCTCCAGTGATTTGAGTAAGGGCACAGACTCGATGAAACTCTCGTACATCCTCCTCTTCTTGTAATTGTTCTTCACAATGAGTCTACGAAATGTGGCACGGTCCTAgggaaaacaaacaagtaatgaagctgctgctgctcctcctgtGCTCGGCCACGGGGAGGCACTGCAGCGGCATGAACCATCAGAGCAGAGCCTGGCTCCATTCATAGATTACAGGACTCCATTCTtaacatgtactgtatttggTAACATGAACTGTACCTAACCTGCTAACAATGCAATCCCAAGGAGACAACTAGTGGGAAAACAGTTTGAAACTGAGCTTTTAAGATTTAGAAAAGGTAGCACTTGCAGTTAGAAATTGTTGGCAGTTGGCAAATTGGATCATTTATGACTTACAAACATTGCAAACAATCTTCAGGTAATTAGGCAATTGTTTGACATAAATGTGCGTTTCTCCTTGGGGCATTCTAACAGTATTTTATAATCATCAGTTAGATTTAGTTTAGTTAATTTGCACAAACGAAGATATAAAGtacataataaattaaaaaagcaatttcagttgaggagaggaaagaagctTGAAAGGCTTATTCAGAGTCCTTTCCtaatacaagtaaaaacaacaaaaaaaaacattatagatatctagagcagagatcttcaacagggc

Function

NR:

description
PREDICTED: cAMP-dependent protein kinase type II-alpha regulatory subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71466 False 592 lncRNA 0.49 2 27138131 27202849
TU71468 True 2570 lncRNA 0.40 7 27171624 27207789
TU71469 False 1546 lncRNA 0.45 6 27138131 27206634

Neighbor

gene id symbol gene type direction distance location
sema3bl sema3g coding upstream 175238 26901475 ~ 26962893 (+)
LOC120559520 NA coding upstream 286423 26812221 ~ 26851708 (+)
actr8 actr8 coding upstream 345737 26785790 ~ 26792394 (+)
LOC120559767 NA coding upstream 355099 26775810 ~ 26783032 (+)
cacna1db cacna1d coding upstream 382840 26659171 ~ 26755291 (+)
trnam-cau_2 NA coding downstream 168434 27376223 ~ 27376294 (+)
trnam-cau_3 NA coding downstream 171107 27378896 ~ 27378967 (+)
si:dkey-72l14.3 LOC100706739,LOC101069958,LOC103385031,LOC104952267 coding downstream 498707 27706496 ~ 27724463 (+)
trnar-ccu_1 NA coding downstream 555576 27763365 ~ 27763437 (+)
trnar-ccu_2 NA coding downstream 584703 27792492 ~ 27792564 (+)
G53445 NA non-coding upstream 144449 26989829 ~ 26993682 (+)
G53418 NA non-coding upstream 314510 26820661 ~ 26823621 (+)
G53285 NA non-coding upstream 506524 26627296 ~ 26631607 (+)
LOC120559830 NA non-coding upstream 715072 26414885 ~ 26423059 (+)
G53248 LOC101164642,LOC104966947,LOC100690915,LOC102195969,LOC104926428,LOC101062277 non-coding upstream 735703 26397199 ~ 26402428 (+)
G53487 NA non-coding downstream 45814 27253603 ~ 27255190 (+)
G53569 impdh2,LOC102785462 non-coding downstream 351164 27558953 ~ 27630584 (+)
G53586 arih2,LOC102785176 non-coding downstream 431057 27638846 ~ 27643964 (+)
G53588 NA non-coding downstream 436967 27644756 ~ 27647329 (+)
G53596 NA non-coding downstream 453859 27661648 ~ 27662098 (+)
G53305 NA other upstream 337385 26800096 ~ 26800746 (+)
LOC120559571 vapb,LOC100711919,LOC102796136,LOC101481364 other upstream 600780 26483532 ~ 26537351 (+)
gnas gnas,LOC102796627,LOC104936173 other upstream 614243 26490442 ~ 26523888 (+)
atp5f1e NA other upstream 693241 26443050 ~ 26444890 (+)
LOC120559113 LOC108236696,LOC104966950,LOC103362773,LOC103384494 other upstream 755084 26378192 ~ 26383047 (+)
G53488 NA other downstream 47585 27255374 ~ 27255716 (+)
LOC120559859 LOC101468803,LOC100690459 other downstream 204463 27412252 ~ 27417459 (+)
LOC120559343 NA other downstream 377736 27585525 ~ 27595409 (+)
bsna bsn,LOC102782891,LOC106513106 other downstream 746610 27954399 ~ 28143801 (+)
casp9 LOC104954971 other downstream 1111848 28319637 ~ 28322779 (+)

Expression


Co-expression Network